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    HCoSV-D_gp1 polyprotein [ Human cosavirus D ]

    Gene ID: 7986824, updated on 6-Aug-2016
    Gene symbol
    HCoSV-D_gp1
    Gene description
    polyprotein
    Locus tag
    HCoSV-D_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Human cosavirus D (strain: HCoSV-D1, isolate: 5004, nat-host: Homo sapiens)
    Lineage
    Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Cosavirus; unclassified Cosavirus
    Sequence:
    NC_012802.1 (748..7128)

    NC_012802.1Genomic Context describing neighboring genes

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Names
    polyprotein
    VP4
    VP2
    VP3
    VP1
    2A
    2B
    3C
    3A
    3B
    3C
    3D

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_012802.1 Reference assembly

      Range
      748..7128
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_002956076.1 polyprotein [Human cosavirus D]

      See identical proteins and their annotated locations for YP_002956076.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B8XTQ4
      Conserved Domains (5) summary
      cd00205
      Location:408566
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00548
      Location:14981638
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00910
      Location:11291230
      RNA_helicase; RNA helicase
      cl02808
      Location:16762123
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
      cl13999
      Location:701848
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    2. YP_002956119.1 VP4

    3. YP_002956120.1 VP2

      Conserved Domains (1) summary
      cd00205
      Location:60265
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    4. YP_002956121.1 VP3

      Conserved Domains (1) summary
      cd00205
      Location:70228
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    5. YP_002956122.1 VP1

      Conserved Domains (1) summary
      cl13999
      Location:132279
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    6. YP_002956123.1 2A

    7. YP_002956124.1 2B

    8. YP_002956125.1 3C

      Conserved Domains (2) summary
      pfam00910
      Location:116217
      RNA_helicase; RNA helicase
      cl04955
      Location:187263
      LanC_like; Cyclases involved in the biosynthesis of lantibiotics, and similar proteins
    9. YP_002956126.1 3A

    10. YP_002956127.1 3B

    11. YP_002956128.1 3C

      Conserved Domains (1) summary
      pfam00548
      Location:37177
      Peptidase_C3; 3C cysteine protease (picornain 3C)
    12. YP_002956129.1 3D

      Conserved Domains (1) summary
      cl02808
      Location:12441
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
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