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    LOC100282178 amelogenin precursor like protein [ Zea mays ]

    Gene ID: 100282178, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100282178
    Gene description
    amelogenin precursor like protein
    Locus tag
    ZEAMMB73_Zm00001d029339
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G350312
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (65829055..65832045)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (66569893..66572883)

    Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene glycine-rich cell wall structural protein 2 Neighboring gene U2 spliceosomal RNA Neighboring gene 40S ribosomal protein S9-2-like Neighboring gene small nucleolar RNA Z161/Z228 Neighboring gene small nucleolar RNA Z162

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    2. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amelogenin precursor like protein
    Names
    Transcription factor bHLH47
    bHLH transcription factor
    putative HLH DNA-binding domain superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001155090.1 → NP_001148562.1  amelogenin precursor like protein

      See identical proteins and their annotated locations for NP_001148562.1

      Status: PROVISIONAL

      Source sequence(s)
      BT067737
      UniProtKB/TrEMBL
      B6T4L8, B8A2P8
      Conserved Domains (1) summary
      pfam00010
      Location:37 → 86
      HLH; Helix-loop-helix DNA-binding domain

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      65829055..65832045
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008677805.4 → XP_008676027.1  amelogenin precursor like protein isoform X1

      See identical proteins and their annotated locations for XP_008676027.1

      UniProtKB/TrEMBL
      B6T4L8, B8A2P8
      Conserved Domains (1) summary
      pfam00010
      Location:37 → 86
      HLH; Helix-loop-helix DNA-binding domain

    2. XM_008677811.4 → XP_008676033.1  amelogenin precursor like protein isoform X1

      See identical proteins and their annotated locations for XP_008676033.1

      UniProtKB/TrEMBL
      B6T4L8, B8A2P8
      Conserved Domains (1) summary
      pfam00010
      Location:37 → 86
      HLH; Helix-loop-helix DNA-binding domain

    3. XM_008677814.4 → XP_008676036.1  amelogenin precursor like protein isoform X1

      See identical proteins and their annotated locations for XP_008676036.1

      UniProtKB/TrEMBL
      B6T4L8, B8A2P8
      Conserved Domains (1) summary
      pfam00010
      Location:37 → 86
      HLH; Helix-loop-helix DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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