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    FdvOgp1 pol protein [ Foot-and-mouth disease virus - type O ]

    Gene ID: 949143, updated on 20-May-2017
    Gene symbol
    FdvOgp1
    Gene description
    pol protein
    Locus tag
    FdvOgp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Foot-and-mouth disease virus - type O (serotype: O, nat-host: swine, gb-acronym: FMDV-O, old-name: Foot-and-mouth disease virus O)
    Lineage
    Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Aphthovirus
    Sequence:
    NC_004004.1 (1059..8027)

    NC_004004.1Genomic Context describing neighboring genes

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Miscellaneous features

    • Loc: 1955-1960 artificial SspI site; results in no change in translation
    • Loc: 3864-3917 artificial XmaI site; results in no change in translation
    Names
    pol protein
    Lab
    VP4
    VP2
    VP3
    VP1
    2A
    2B
    2C
    3A
    3B1/3B2/3B3
    3C
    3D

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004004.1 Reference assembly

      Range
      1059..8027
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_658990.1 pol protein [Foot-and-mouth disease virus - type O]

      See identical proteins and their annotated locations for NP_658990.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q9DLK1
      Conserved Domains (7) summary
      pfam00073
      Location:311475
      Rhv; picornavirus capsid protein
      pfam00548
      Location:16421826
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00680
      Location:18652314
      RdRP_1; RNA dependent RNA polymerase
      pfam00910
      Location:12131315
      RNA_helicase; RNA helicase
      pfam05408
      Location:1201
      Peptidase_C28; Foot-and-mouth virus L-proteinase
      pfam08935
      Location:202285
      VP4_2; Viral protein VP4 subunit
      cl13999
      Location:723856
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    2. NP_740456.1 Lab

      Conserved Domains (1) summary
      pfam05408
      Location:1201
      Peptidase_C28; Foot-and-mouth virus L-proteinase
    3. NP_740457.1 VP4

      Conserved Domains (1) summary
      pfam08935
      Location:184
      VP4_2; Viral protein VP4 subunit
    4. NP_740458.1 VP2

      Conserved Domains (1) summary
      pfam00073
      Location:25189
      Rhv; picornavirus capsid protein
    5. NP_740459.1 VP3

      Conserved Domains (1) summary
      pfam00073
      Location:31187
      Rhv; picornavirus capsid protein
    6. NP_740460.1 VP1

      Conserved Domains (1) summary
      cl13999
      Location:1132
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    7. NP_740461.1 2A

    8. NP_740462.1 2B

    9. NP_740463.1 2C

      Conserved Domains (1) summary
      pfam00910
      Location:106208
      RNA_helicase; RNA helicase
    10. NP_740464.1 3A

    11. NP_740465.1 3B1/3B2/3B3

    12. NP_740466.1 3C

      Conserved Domains (1) summary
      pfam00548
      Location:3187
      Peptidase_C3; 3C cysteine protease (picornain 3C)
    13. NP_740467.1 3D

      Conserved Domains (1) summary
      pfam00680
      Location:13462
      RdRP_1; RNA dependent RNA polymerase
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