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    TUBB7P tubulin beta 7 pseudogene [ Homo sapiens (human) ]

    Gene ID: 56604, updated on 8-Nov-2023

    Summary

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    Official Symbol
    TUBB7Pprovided by HGNC
    Official Full Name
    tubulin beta 7 pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:12413
    See related
    Ensembl:ENSG00000251297 AllianceGenome:HGNC:12413
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TUBB4Q
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    Genomic context

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    Location:
    4q35.2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (189982335..189984929, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (193350543..193353137, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (190903490..190906084, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:190862333-190862832 Neighboring gene FSHD region gene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:190896381-190896551 Neighboring gene MLLT10 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 15710 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:190937742-190937939 Neighboring gene RNA, 5S ribosomal pseudogene 174 Neighboring gene RNA, 5S ribosomal pseudogene 175

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of a novel beta-tubulin subfamily with one member (TUBB4Q) located near the telomere of chromosome region 4q35. van Geel M, et al. Cytogenet Cell Genet, 2000. PMID 10828619
    2. The FSHD region on human chromosome 4q35 contains potential coding regions among pseudogenes and a high density of repeat elements. van Geel M, et al. Genomics, 1999 Oct 1. PMID 10512680
    3. A cascade of complex subtelomeric duplications during the evolution of the hominoid and Old World monkey genomes. van Geel M, et al. Am J Hum Genet, 2002 Jan. PMID 11731935, Free PMC Article
    4. Proteome-wide Identification of HtrA2/Omi Substrates. Vande Walle L, et al. J Proteome Res, 2007 Mar. PMID 17266347
    5. Defining human ERAD networks through an integrative mapping strategy. Christianson JC, et al. Nat Cell Biol, 2011 Nov 27. PMID 22119785, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • putative tubulin beta-4q chain
    • tubulin, beta polypeptide 4, member Q, pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_029424.3 

      Range
      101..2695
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      189982335..189984929 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_015495300.1 Reference GRCh38.p14 PATCHES

      Range
      75265..77859 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_015495301.1 Reference GRCh38.p14 PATCHES

      Range
      75265..77859 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_2

    Genomic

    1. NT_187650.1 Reference GRCh38.p14 ALT_REF_LOCI_2

      Range
      319866..322460 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      193350543..193353137 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_020040.3: Suppressed sequence

      Description
      NM_020040.3: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

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