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    GSKIP GSK3B interacting protein [ Sus scrofa (pig) ]

    Gene ID: 100154584, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GSKIPprovided by VGNC
    Official Full Name
    GSK3B interacting proteinprovided by VGNC
    Primary source
    VGNC:VGNC:103956
    See related
    Ensembl:ENSSSCG00000032134
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    C7H14orf129
    Expression
    Ubiquitous expression in spleen (RPKM 9.5), lung (RPKM 8.2) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See GSKIP in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (117586742..117607575)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (124844708..124865661)

    Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene bradykinin receptor B1 Neighboring gene autophagy related 2B Neighboring gene adenylate kinase 7 Neighboring gene poly(A) polymerase alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables kinase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase A binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GSK3B-interacting protein; GSK3-beta interaction protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243496.1 → NP_001230425.1  GSK3B-interacting protein

      Status: VALIDATED

      Source sequence(s)
      AK230979
      UniProtKB/TrEMBL
      A0A8D0UUC9
      Related
      ENSSSCP00000039633.3, ENSSSCT00000049969.3
      Conserved Domains (1) summary
      pfam05303
      Location:34 → 133
      DUF727; Protein of unknown function (DUF727)

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

      Range
      117586742..117607575
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005666425.3 → XP_005666482.1  GSK3-beta interaction protein isoform X1

      UniProtKB/TrEMBL
      A0A287A787, A0A481B832, A0A8D0NQ94, A0A8D0UUC9, A0A8D1YBA7
      Conserved Domains (1) summary
      pfam05303
      Location:33 → 133
      DUF727; Protein of unknown function (DUF727)
    Nucleotide Protein
    Heading Accession and Version

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