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    Cideb cell death-inducing DNA fragmentation factor, alpha subunit-like effector B [ Mus musculus (house mouse) ]

    Gene ID: 12684, updated on 22-Apr-2017
    Official Symbol
    Cidebprovided by MGI
    Official Full Name
    cell death-inducing DNA fragmentation factor, alpha subunit-like effector Bprovided by MGI
    Primary source
    MGI:MGI:1270844
    See related
    Ensembl:ENSMUSG00000022219 Vega:OTTMUSG00000027852
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CIDE-B; AI790179; 1110030C18Rik
    Orthologs
    Location:
    14; 14 C3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (55754052..55758424, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (56372889..56377261, complement)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene Rab geranylgeranyl transferase, a subunit Neighboring gene dehydrogenase/reductase (SDR family) member 1 Neighboring gene NOP9 nucleolar protein Neighboring gene leukotriene B4 receptor 2 Neighboring gene leukotriene B4 receptor 1 Neighboring gene adenylate cyclase 4

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    activation of cysteine-type endopeptidase activity ISO
    Inferred from Sequence Orthology
    more info
     
    apoptotic process ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    execution phase of apoptosis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of cell death ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of release of cytochrome c from mitochondria ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of apoptotic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    lipid particle IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    cell death activator CIDE-B
    Names
    DFFA-like B
    cell death-inducing DFFA-like effector B

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009894.3NP_034024.2  cell death activator CIDE-B

      See identical proteins and their annotated locations for NP_034024.2

      Status: VALIDATED

      Source sequence(s)
      AK003968, BQ175754, CB600615
      Consensus CDS
      CCDS27127.1
      UniProtKB/Swiss-Prot
      O70303
      UniProtKB/TrEMBL
      Q3V4D3
      Related
      ENSMUSP00000001497.7, OTTMUSP00000034968, ENSMUST00000001497.7, OTTMUST00000068961
      Conserved Domains (1) summary
      cd06537
      Location:34114
      CIDE_N_B; CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      55754052..55758424 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_026804.1: Suppressed sequence

      Description
      NM_026804.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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