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    Sdc4 syndecan 4 [ Mus musculus (house mouse) ]

    Gene ID: 20971, updated on 12-Mar-2017
    Official Symbol
    Sdc4provided by MGI
    Official Full Name
    syndecan 4provided by MGI
    Primary source
    MGI:MGI:1349164
    See related
    Ensembl:ENSMUSG00000017009 Vega:OTTMUSG00000001157
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    S4; Synd4; AA959608; AW108331; ryudocan; syndecan-4
    Orthologs
    Location:
    2 H3; 2 85.16 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (164424247..164443188, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (164249747..164268688, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene microRNA 7678 Neighboring gene secretory leukocyte peptidase inhibitor Neighboring gene matrilin 4 Neighboring gene recombination signal binding protein for immunoglobulin kappa J region-like Neighboring gene SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae) Neighboring gene transformation related protein 53 target 5 Neighboring gene dysbindin (dystrobrevin binding protein 1) domain containing 2 Neighboring gene uncharacterized LOC102638515

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    fibronectin binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein kinase C binding ISO
    Inferred from Sequence Orthology
    more info
     
    thrombospondin receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    inner ear receptor stereocilium organization IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    negative regulation of T cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    neural tube closure IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    positive regulation of exosomal secretion ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of extracellular exosome assembly ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of focal adhesion assembly ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of protein kinase activity ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of stress fiber assembly ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of fibroblast migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    wound healing IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    costamere ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular exosome ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    focal adhesion ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane raft ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    syndecan-4
    Names
    ryudocan core protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011521.2NP_035651.1  syndecan-4 precursor

      See identical proteins and their annotated locations for NP_035651.1

      Status: PROVISIONAL

      Source sequence(s)
      AL590429
      Consensus CDS
      CCDS17036.1
      UniProtKB/Swiss-Prot
      O35988
      UniProtKB/TrEMBL
      Q3U5S6
      Related
      ENSMUSP00000017153, OTTMUSP00000001098, ENSMUST00000017153, OTTMUST00000002252
      Conserved Domains (1) summary
      pfam01034
      Location:139196
      Syndecan; Syndecan domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      164424247..164443188 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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