Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Mt2A metallothionein 2A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 689415, updated on 1-Jun-2017
    Official Symbol
    Mt2Aprovided by RGD
    Official Full Name
    metallothionein 2Aprovided by RGD
    Primary source
    RGD:1592345
    See related
    Ensembl:ENSRNOG00000043098
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Mt2
    Location:
    19p12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (11307966..11308740, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 19 NC_005118.3 (11283093..11283867, complement)

    Chromosome 19 - NC_005118.4Genomic Context describing neighboring genes Neighboring gene nucleoporin 93 Neighboring gene metallothionein 1 Neighboring gene metallothionein 3 Neighboring gene metallothionein 4

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    • Mineral absorption, organism-specific biosystem (from KEGG)
      Mineral absorption, organism-specific biosystemMinerals are one of the five fundamental groups of nutrients needed to sustain life. Of the minerals, calcium plays innumerable roles in our bodies, serving as a main component of bone as well as an ...
    • Mineral absorption, conserved biosystem (from KEGG)
      Mineral absorption, conserved biosystemMinerals are one of the five fundamental groups of nutrients needed to sustain life. Of the minerals, calcium plays innumerable roles in our bodies, serving as a main component of bone as well as an ...

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    cadmium ion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    drug binding IEA
    Inferred from Electronic Annotation
    more info
     
    drug binding ISO
    Inferred from Sequence Orthology
    more info
     
    zinc ion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    zinc ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    zinc ion binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    astrocyte activation IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    cellular response to drug IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to drug ISO
    Inferred from Sequence Orthology
    more info
     
    cellular response to erythropoietin IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to erythropoietin ISO
    Inferred from Sequence Orthology
    more info
     
    cellular response to interleukin-3 IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to interleukin-3 ISO
    Inferred from Sequence Orthology
    more info
     
    cellular response to zinc ion ISO
    Inferred from Sequence Orthology
    more info
     
    cellular response to zinc ion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cellular zinc ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
     
    cellular zinc ion homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    detoxification of copper ion IEA
    Inferred from Electronic Annotation
    more info
     
    detoxification of copper ion ISO
    Inferred from Sequence Orthology
    more info
     
    negative regulation of growth ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nitric oxide mediated signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    nitric oxide mediated signal transduction ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    perinuclear region of cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001137564.1NP_001131036.1  metallothionein 2A

      See identical proteins and their annotated locations for NP_001131036.1

      Status: PROVISIONAL

      Source sequence(s)
      BC168768
      UniProtKB/Swiss-Prot
      P04355
      UniProtKB/TrEMBL
      B6ID08
      Related
      ENSRNOP00000062585.1, ENSRNOT00000067391.1
      Conserved Domains (1) summary
      pfam00131
      Location:561
      Metallothio; Metallothionein

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005118.4 Reference Rnor_6.0 Primary Assembly

      Range
      11307966..11308740 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000087.1 Alternate Rn_Celera

      Range
      10717971..10718745 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center