Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Phf11d PHD finger protein 11D [ Mus musculus (house mouse) ]

    Gene ID: 219132, updated on 25-May-2017
    Official Symbol
    Phf11dprovided by MGI
    Official Full Name
    PHD finger protein 11Dprovided by MGI
    Primary source
    MGI:MGI:1277133
    See related
    Ensembl:ENSMUSG00000068245 Vega:OTTMUSG00000034689
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Phf11; Phf11l; D14Ertd668e
    Location:
    14 C3; 14 31.48 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (59347407..59365490, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (59966244..59984327, complement)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene PHD finger protein 11A Neighboring gene PHD finger protein 11B Neighboring gene predicted gene, 45935 Neighboring gene PHD finger protein 11C Neighboring gene SET domain, bifurcated 2

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Markers

    Readthrough Gm45935

    Readthrough gene: Gm45935, Included gene: Setdb2, Included gene: Phf11c

    Homology

    Clone Names

    • MGC29273

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nuclear membrane ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    PHD finger protein 11
    Names
    PHD finger protein 11 family member

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199015.4NP_950180.3  PHD finger protein 11

      See identical proteins and their annotated locations for NP_950180.3

      Status: VALIDATED

      Source sequence(s)
      BG083212, EU155107
      Consensus CDS
      CCDS27170.3
      UniProtKB/Swiss-Prot
      A6H5X4
      UniProtKB/TrEMBL
      B4XVQ0
      Related
      ENSMUSP00000092779.4, OTTMUSP00000047983, ENSMUST00000095157.10, OTTMUST00000088078
      Conserved Domains (1) summary
      cl22851
      Location:28142
      PHD_SF; PHD finger superfamily

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      59347407..59365490 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001164323.1: Suppressed sequence

      Description
      NM_001164323.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Support Center