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    S1PR2 sphingosine-1-phosphate receptor 2 [ Homo sapiens (human) ]

    Gene ID: 9294, updated on 5-Aug-2022

    Summary

    Official Symbol
    S1PR2provided by HGNC
    Official Full Name
    sphingosine-1-phosphate receptor 2provided by HGNC
    Primary source
    HGNC:HGNC:3169
    See related
    Ensembl:ENSG00000267534 MIM:605111; AllianceGenome:HGNC:3169
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    EDG5; H218; LPB2; S1P2; AGR16; EDG-5; DFNB68; Gpcr13
    Summary
    This gene encodes a member of the G protein-coupled receptors, as well as the EDG family of proteins. The encoded protein is a receptor for sphingosine 1-phosphate, which participates in cell proliferation, survival, and transcriptional activation. Defects in this gene have been associated with congenital profound deafness. [provided by RefSeq, Mar 2016]
    Expression
    Broad expression in placenta (RPKM 10.4), lymph node (RPKM 5.1) and 22 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See S1PR2 in Genome Data Viewer
    Location:
    19p13.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    110 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (10221433..10231331, complement)
    110 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (10347578..10357458, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (10332109..10342007, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene DNA methyltransferase 1 Neighboring gene origin of replication in DNMT1 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 10 pseudogene Neighboring gene microRNA 4322 Neighboring gene uncharacterized LOC105372272 Neighboring gene mitochondrial ribosomal protein L4 Neighboring gene intercellular adhesion molecule 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Potential readthrough

    Included gene: DNMT1

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables G protein-coupled peptide receptor activity IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables G protein-coupled receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables G protein-coupled receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables integrin binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables lipid binding TAS
    Traceable Author Statement
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables sphingosine-1-phosphate receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables sphingosine-1-phosphate receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables sphingosine-1-phosphate receptor activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within G protein-coupled receptor signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in actin cytoskeleton reorganization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in adenylate cyclase-activating G protein-coupled receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in excitatory postsynaptic potential IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in filopodium assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of excitatory postsynaptic potential IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of smooth muscle cell migration IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of vascular associated smooth muscle cell proliferation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of cell population proliferation TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in positive regulation of establishment of endothelial barrier IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of peptidyl-threonine phosphorylation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in sphingosine-1-phosphate receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in sphingosine-1-phosphate receptor signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane TAS
    Traceable Author Statement
    more info
     
    located_in postsynapse IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    sphingosine 1-phosphate receptor 2
    Names
    CTD-2369P2.2
    S1P receptor 2
    S1P receptor EDG5
    S1P receptor Edg-5
    deafness, autosomal recessive 68
    endothelial differentiation G-protein coupled receptor 5
    endothelial differentiation, sphingolipid G-protein-coupled receptor, 5
    sphingosine 1-phosphate receptor Edg-5

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_046802.1 RefSeqGene

      Range
      5477..15375
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_1356

    mRNA and Protein(s)

    1. NM_004230.4NP_004221.3  sphingosine 1-phosphate receptor 2

      See identical proteins and their annotated locations for NP_004221.3

      Status: REVIEWED

      Source sequence(s)
      AC011511, BC069598, BF513287, BG055846
      Consensus CDS
      CCDS12229.1
      UniProtKB/Swiss-Prot
      O95136, Q86UN8
      UniProtKB/TrEMBL
      A0A024R7B2
      Related
      ENSP00000496438.1, ENST00000646641.1
      Conserved Domains (1) summary
      cd15347
      Location:34299
      7tmA_S1PR2_Edg5; sphingosine-1-phosphate receptor subtype 2 (S1PR2 or S1P2), also called endothelial differentiation gene 5 (Edg5), member of the class A family of seven-transmembrane G protein-coupled receptors

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      10221433..10231331 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      10347578..10357458 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)