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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029523.1 RefSeqGene
- Range
-
5790..95395
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001079864.3 → NP_001073333.1 tax1-binding protein 1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame donor splice site at an internal coding exon compared to variant 1. This results in a shorter isoform (2, also known as TXBP151-L) missing an internal protein segment compared to isoform 1. Variants 2 and 3 encode the same isoform.
- Source sequence(s)
-
AF090891, AL136586, BU679319, DC424592
- Consensus CDS
-
CCDS43561.1
- UniProtKB/TrEMBL
-
B4DSG5
- Related
- ENSP00000265393.6, ENST00000265393.10
- Conserved Domains (1) summary
-
- cl25732
Location:17 → 460
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_001206901.1 → NP_001193830.1 tax1-binding protein 1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) contains an alternate 5' non-coding exon, and uses an alternate in-frame donor splice site at an internal coding exon compared to variant 1. This results in a shorter isoform (2, also known as TXBP151-L) missing an internal protein segment compared to isoform 1. Variants 2 and 3 encode the same isoform.
- Source sequence(s)
-
AF090891, AK299729, AL136586, BU679319
- Consensus CDS
-
CCDS43561.1
- UniProtKB/TrEMBL
-
B4DSG5
- Related
- ENSP00000444811.1, ENST00000543117.5
- Conserved Domains (1) summary
-
- cl25732
Location:17 → 460
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_001206902.2 → NP_001193831.1 tax1-binding protein 1 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) is missing an internal coding exon compared to variant 1. This results in the creation of an upstream ORF (uORF), translation of which will render this transcript a candidate for nonsense-mediated mRNA decay (NMD). However, since the uORF has a weak Kozak signal, translation from an in-frame downstream AUG is possible by leaky scanning, resulting in an isoform (3) with a shorter N-terminus and missing an internal protein segment compared to isoform 1.
- Source sequence(s)
-
AF090891, AL136586, BU679319, DC424592
- Consensus CDS
-
CCDS56471.1
- UniProtKB/Swiss-Prot
-
Q86VP1
- Related
- ENSP00000391907.2, ENST00000433216.6
- Conserved Domains (1) summary
-
- cl23720
Location:14 → 104
- RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
-
NM_001362794.2 → NP_001349723.1 tax1-binding protein 1 isoform 4
Status: REVIEWED
- Source sequence(s)
-
AI580161, AI650286, BP208089, BU680065, CA418315, CB138720, DA176922, DB169908, DC357536
- UniProtKB/TrEMBL
-
B4DSG5
- Conserved Domains (1) summary
-
- cl25732
Location:17 → 460
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_001362795.2 → NP_001349724.1 tax1-binding protein 1 isoform 5
Status: REVIEWED
- Source sequence(s)
-
AA100874, AI650286, BP208089, BU680065, CA418315, CB138720, DA176922, DB169908, DC357536
- UniProtKB/TrEMBL
-
B4DSG5
- Conserved Domains (1) summary
-
- cl25732
Location:17 → 460
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_006024.7 → NP_006015.4 tax1-binding protein 1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AL136586, BU679319, DC424592
- Consensus CDS
-
CCDS5415.1
- UniProtKB/Swiss-Prot
- A4D196, B4DKU7, E7ENV2, O60398, O95770, Q13311, Q86VP1, Q9BQG5, Q9UI88
- UniProtKB/TrEMBL
-
B8ZZD4
- Related
- ENSP00000379612.2, ENST00000396319.7
- Conserved Domains (2) summary
-
- pfam07888
Location:17 → 460
- CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like
- cl23720
Location:131 → 261
- RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000007.14 Reference GRCh38.p14 Primary Assembly
- Range
-
27739373..27829767
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060931.1 Alternate T2T-CHM13v2.0
- Range
-
27875789..27967476
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)