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    cxadr CXADR, Ig-like cell adhesion molecule [ Danio rerio (zebrafish) ]

    Gene ID: 791793, updated on 1-Aug-2018

    Summary

    Official Symbol
    cxadrprovided by ZNC
    Official Full Name
    CXADR, Ig-like cell adhesion moleculeprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-020814-2
    See related
    Ensembl:ENSDARG00000043658 Vega:OTTDARG00000019536
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    car; cb331; fb76g12; wu:fb76g12
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs

    Genomic context

    See cxadr in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (27096120..27158240)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (27134407..27196527)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene microRNA 192 Neighboring gene EH-domain containing 1b Neighboring gene autism susceptibility candidate 2a Neighboring gene integrator complex subunit 2

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Clone Names

    • MGC55255

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    virus receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    cell adhesion IEA
    Inferred from Electronic Annotation
    more info
     
    kidney development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    adherens junction IEA
    Inferred from Electronic Annotation
    more info
     
    basolateral plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    bicellular tight junction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    bicellular tight junction IEA
    Inferred from Electronic Annotation
    more info
     
    cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    coxsackievirus and adenovirus receptor homolog
    Names
    adenovirus receptor
    coxsackie virus and adenovirus receptor

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_152948.1NP_694480.1  coxsackievirus and adenovirus receptor homolog precursor

      See identical proteins and their annotated locations for NP_694480.1

      Status: PROVISIONAL

      Source sequence(s)
      AF268197
      UniProtKB/Swiss-Prot
      Q90Y50
      UniProtKB/TrEMBL
      B7ZUW2
      Related
      ENSDARP00000064106.6, OTTDARP00000019893, ENSDART00000064107.8, OTTDART00000024035
      Conserved Domains (4) summary
      smart00410
      Location:32141
      IG_like; Immunoglobulin like
      pfam07679
      Location:141233
      I-set; Immunoglobulin I-set domain
      pfam07686
      Location:28141
      V-set; Immunoglobulin V-set domain
      pfam13927
      Location:147220
      Ig_3; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      27096120..27158240
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394787.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      319249..381369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395289.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      121533..183812
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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