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    Ttc30a1 tetratricopeptide repeat domain 30A1 [ Mus musculus (house mouse) ]

    Gene ID: 78802, updated on 28-Oct-2021

    Summary

    Official Symbol
    Ttc30a1provided by MGI
    Official Full Name
    tetratricopeptide repeat domain 30A1provided by MGI
    Primary source
    MGI:MGI:1926052
    See related
    Ensembl:ENSMUSG00000075271
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930506L13Rik
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    Genomic context

    See Ttc30a1 in Genome Data Viewer
    Location:
    2; 2 C3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (75809450..75812311, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (75979106..75981967, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (75817163..75820024, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 54164 Neighboring gene tetratricopeptide repeat domain 30A2 Neighboring gene phosphodiesterase 11A Neighboring gene predicted gene, 52518 Neighboring gene cytochrome c, testis

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables intraciliary transport particle B binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables intraciliary transport particle B binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell projection organization IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within intraciliary anterograde transport IC
    Inferred by Curator
    more info
    PubMed 
    involved_in intraciliary transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in axonemal microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in centrosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of intraciliary transport particle B IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of intraciliary transport particle B IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    tetratricopeptide repeat protein 30A1
    Names
    TPR repeat protein 30A1
    novel tetratrico peptide repeat (TPR) containing protein
    tetratricopeptide repeat domain 30A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030188.3NP_084464.3  tetratricopeptide repeat protein 30A1

      See identical proteins and their annotated locations for NP_084464.3

      Status: VALIDATED

      Source sequence(s)
      AK045096, BU610816
      Consensus CDS
      CCDS16154.1
      UniProtKB/Swiss-Prot
      Q99J38
      Related
      ENSMUSP00000097574.4, ENSMUST00000099994.5
      Conserved Domains (2) summary
      TIGR02917
      Location:15216
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:4474
      TPR; TPR repeat [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      75809450..75812311 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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