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    RPS6KB1 ribosomal protein S6 kinase B1 [ Homo sapiens (human) ]

    Gene ID: 6198, updated on 11-Apr-2024

    Summary

    Official Symbol
    RPS6KB1provided by HGNC
    Official Full Name
    ribosomal protein S6 kinase B1provided by HGNC
    Primary source
    HGNC:HGNC:10436
    See related
    Ensembl:ENSG00000108443 MIM:608938; AllianceGenome:HGNC:10436
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    S6K; PS6K; S6K1; STK14A; p70-S6K; p70 S6KA; p70-alpha; S6K-beta-1; p70(S6K)-alpha
    Summary
    This gene encodes a member of the ribosomal S6 kinase family of serine/threonine kinases. The encoded protein responds to mTOR (mammalian target of rapamycin) signaling to promote protein synthesis, cell growth, and cell proliferation. Activity of this gene has been associated with human cancer. Alternatively spliced transcript variants have been observed. The use of alternative translation start sites results in isoforms with longer or shorter N-termini which may differ in their subcellular localizations. There are two pseudogenes for this gene on chromosome 17. [provided by RefSeq, Jan 2013]
    Expression
    Ubiquitous expression in esophagus (RPKM 6.9), thyroid (RPKM 6.8) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    17q23.1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (59893121..59950574)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (60761869..60819318)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (57970482..58027935)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:57923900-57924888 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8783 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12518 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12519 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:57931677-57932291 Neighboring gene RNA, U6 small nuclear 450, pseudogene Neighboring gene tubulin delta 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12520 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8784 Neighboring gene NADH:ubiquinone oxidoreductase subunit B8 pseudogene 2 Neighboring gene ribosomal protein S29 pseudogene 21 Neighboring gene TBC1D3P1-DHX40P1 readthrough, transcribed pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8785 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12521 Neighboring gene ring finger protein, transmembrane 1 Neighboring gene RNFT1 divergent transcript Neighboring gene DEAH-box helicase 40 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
    EBI GWAS Catalog
    Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
    EBI GWAS Catalog
    Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
    EBI GWAS Catalog

    HIV-1 interactions

    Protein interactions

    Protein Gene Interaction Pubs
    Envelope transmembrane glycoprotein gp41 env Secretion of IL-10 is upregulated by HIV-1 gp41 in monocytes through activation of cAMP/adenylate cyclase and p70 (S6)-kinase; up-regulation of IL-10 is paralleled by an enhanced expression of the chemokine receptor CCR5 PubMed
    Tat tat HIV-1 Tat-peptide(48-60) inhibits AGC-family kinases (PKB, SGK1, S6K1, MSK1), CAMK-family kinases (CAMK1 and MELK) and a STE family kinase (MKK1) PubMed

    Go to the HIV-1, Human Interaction Database

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables PDZ domain binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables peptide binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein phosphatase 2A binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein serine kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein serine/threonine kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein serine/threonine kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein serine/threonine kinase activity TAS
    Traceable Author Statement
    more info
     
    enables protein serine/threonine/tyrosine kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables ribosomal protein S6 kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in G1/S transition of mitotic cell cycle IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in TOR signaling IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in TOR signaling IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in behavioral fear response IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cellular response to dexamethasone stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cellular response to growth factor stimulus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in cellular response to insulin stimulus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in cellular response to nutrient IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in cellular response to type II interferon IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in germ cell development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in long-chain fatty acid import into cell ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in long-term memory IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in modulation of chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of apoptotic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of extrinsic apoptotic signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of insulin receptor signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in peptidyl-serine phosphorylation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in peptidyl-serine phosphorylation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in phosphatidylinositol-mediated signaling TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in positive regulation of TORC1 signaling IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of mitotic cell cycle IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of skeletal muscle tissue growth IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of smooth muscle cell migration IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of smooth muscle cell proliferation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of translation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of translational initiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of translational initiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of glucose import IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to L-leucine IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to electrical stimulus involved in regulation of muscle adaptation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to ethanol IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to glucagon IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to glucose IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to lipopolysaccharide IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to mechanical stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to nutrient levels IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to testosterone IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to toxic substance IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to tumor necrosis factor IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to xenobiotic stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in signal transduction TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in skeletal muscle atrophy IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in skeletal muscle contraction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    located_in glutamatergic synapse IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
     
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in postsynapse IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ribosomal protein S6 kinase beta-1
    Names
    ribosomal protein S6 kinase I
    ribosomal protein S6 kinase, 70kDa, polypeptide 1
    serine/threonine kinase 14 alpha
    serine/threonine-protein kinase 14A
    NP_001258971.1
    NP_001258972.1
    NP_001258973.1
    NP_001258989.1
    NP_001356598.1
    NP_001356599.1
    NP_001356600.1
    NP_001356601.1
    NP_001356602.1
    NP_001356603.1
    NP_001356604.1
    NP_001356605.1
    NP_001356606.1
    NP_001356607.1
    NP_001356608.1
    NP_003152.1
    XP_011523404.1
    XP_054172845.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_029513.1 RefSeqGene

      Range
      5040..62493
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001272042.2NP_001258971.1  ribosomal protein S6 kinase beta-1 isoform b

      See identical proteins and their annotated locations for NP_001258971.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon, compared to variant 1. This variant can initiate translation from two alternate in-frame AUG start codons. The isoform represented in this RefSeq (b) is derived from the first AUG start codon, and is shorter than isoform a.
      Source sequence(s)
      AC004686, AK297147, AK300202, BP359158, CA444907
      Consensus CDS
      CCDS62272.1
      UniProtKB/TrEMBL
      B4DDM0
      Related
      ENSP00000441993.1, ENST00000443572.6
      Conserved Domains (1) summary
      cd05584
      Location:94393
      STKc_p70S6K; Catalytic domain of the Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase
    2. NM_001272043.2NP_001258972.1  ribosomal protein S6 kinase beta-1 isoform c

      See identical proteins and their annotated locations for NP_001258972.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs in the 3' UTR and uses an alternate splice site in the 3' coding region, which results in a frameshift, compared to variant 1. This variant can initiate translation from two alternate in-frame AUG start codons. The isoform represented in this RefSeq (c) is derived from the first AUG start codon. It has a distinct C-terminus, and is shorter than isoform a.
      Source sequence(s)
      AC004686, BC053365, BP359158, CA444907
      Consensus CDS
      CCDS62271.1
      UniProtKB/Swiss-Prot
      P23443
      Related
      ENSP00000384335.3, ENST00000406116.7
      Conserved Domains (1) summary
      cd05584
      Location:94416
      STKc_p70S6K; Catalytic domain of the Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase
    3. NM_001272044.2NP_001258973.1  ribosomal protein S6 kinase beta-1 isoform d

      See identical proteins and their annotated locations for NP_001258973.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) contains an alternate exon in the 5' region, and initiates translation at the third in-frame start codon, compared to variant 1. The encoded isoform (d) has a shorter N-terminus, compared to isoform a.
      Source sequence(s)
      AC004686, AK297147, BP359158, CA444907
      Consensus CDS
      CCDS62273.1
      UniProtKB/TrEMBL
      B4DDM0
      Related
      ENSP00000376744.3, ENST00000393021.7
      Conserved Domains (1) summary
      cd05584
      Location:41363
      STKc_p70S6K; Catalytic domain of the Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase
    4. NM_001272060.2NP_001258989.1  ribosomal protein S6 kinase beta-1 isoform e

      See identical proteins and their annotated locations for NP_001258989.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) can initiate translation from two alternate in-frame AUG start codons. The isoform represented in this RefSeq (e, also known as p70 or alpha II) is derived from the second AUG start codon, and is shorter at the N-terminus, compared to isoform a.
      Source sequence(s)
      AC004686, AK297147, AK312875, BP359158, CA444907
      UniProtKB/TrEMBL
      B4DDM0
      Conserved Domains (2) summary
      smart00220
      Location:68329
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd05584
      Location:71393
      STKc_p70S6K; Catalytic domain of the Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase
    5. NM_001369669.1NP_001356598.1  ribosomal protein S6 kinase beta-1 isoform f

      Status: REVIEWED

      Source sequence(s)
      AC004686
      UniProtKB/TrEMBL
      B4DDM0
      Conserved Domains (1) summary
      cd05584
      Location:94380
      STKc_p70S6K; Catalytic domain of the Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase
    6. NM_001369670.1NP_001356599.1  ribosomal protein S6 kinase beta-1 isoform g

      Status: REVIEWED

      Source sequence(s)
      AC004686
      UniProtKB/TrEMBL
      B4DDM0
      Conserved Domains (1) summary
      cd05584
      Location:41342
      STKc_p70S6K; Catalytic domain of the Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase
    7. NM_001369671.1NP_001356600.1  ribosomal protein S6 kinase beta-1 isoform h

      Status: REVIEWED

      Source sequence(s)
      AC004686
      UniProtKB/TrEMBL
      B4DDM0
      Conserved Domains (1) summary
      cd05584
      Location:48336
      STKc_p70S6K; Catalytic domain of the Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase
    8. NM_001369672.1NP_001356601.1  ribosomal protein S6 kinase beta-1 isoform i

      Status: REVIEWED

      Source sequence(s)
      AC004686
      UniProtKB/TrEMBL
      B4DDM0
      Conserved Domains (1) summary
      cd05584
      Location:41327
      STKc_p70S6K; Catalytic domain of the Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase
    9. NM_001369673.1NP_001356602.1  ribosomal protein S6 kinase beta-1 isoform j

      Status: REVIEWED

      Source sequence(s)
      AC004686
      Conserved Domains (1) summary
      cl21453
      Location:41142
      PKc_like; Protein Kinases, catalytic domain
    10. NM_001369674.1NP_001356603.1  ribosomal protein S6 kinase beta-1 isoform k

      Status: REVIEWED

      Description
      Transcript Variant: This variant (10), as well as variant 11, encodes isoform k.
      Source sequence(s)
      AC004686
      Conserved Domains (1) summary
      cl21453
      Location:94210
      PKc_like; Protein Kinases, catalytic domain
    11. NM_001369675.1NP_001356604.1  ribosomal protein S6 kinase beta-1 isoform k

      Status: REVIEWED

      Description
      Transcript Variant: This variant (11), as well as variant 10, encodes isoform k.
      Source sequence(s)
      AC004686
      Conserved Domains (1) summary
      cl21453
      Location:94210
      PKc_like; Protein Kinases, catalytic domain
    12. NM_001369676.1NP_001356605.1  ribosomal protein S6 kinase beta-1 isoform l

      Status: REVIEWED

      Description
      Transcript Variant: This variant (12), as well as variants 13-15, encodes isoform l.
      Source sequence(s)
      AC004686
      Conserved Domains (1) summary
      cl21453
      Location:94195
      PKc_like; Protein Kinases, catalytic domain
    13. NM_001369677.1NP_001356606.1  ribosomal protein S6 kinase beta-1 isoform l

      Status: REVIEWED

      Description
      Transcript Variant: This variant (13), as well as variants 12, 14, and 15, encodes isoform l.
      Source sequence(s)
      AC004686
      Conserved Domains (1) summary
      cl21453
      Location:94195
      PKc_like; Protein Kinases, catalytic domain
    14. NM_001369678.1NP_001356607.1  ribosomal protein S6 kinase beta-1 isoform l

      Status: REVIEWED

      Description
      Transcript Variant: This variant (14), as well as variants 12, 13, and 15, encodes isoform l.
      Source sequence(s)
      AC004686
      Conserved Domains (1) summary
      cl21453
      Location:94195
      PKc_like; Protein Kinases, catalytic domain
    15. NM_001369679.1NP_001356608.1  ribosomal protein S6 kinase beta-1 isoform l

      Status: REVIEWED

      Description
      Transcript Variant: This variant (15), as well as variants 12-14, encodes isoform l.
      Source sequence(s)
      AC004686
      Conserved Domains (1) summary
      cl21453
      Location:94195
      PKc_like; Protein Kinases, catalytic domain
    16. NM_003161.4NP_003152.1  ribosomal protein S6 kinase beta-1 isoform a

      See identical proteins and their annotated locations for NP_003152.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) can initiate translation from two alternate in-frame AUG start codons. The isoform represented in this RefSeq (a, also known as p85 or alpha I) is derived from the first AUG start codon, and is the longest isoform.
      Source sequence(s)
      AC004686, AK297147, AK312875, BP359158, CA444907
      Consensus CDS
      CCDS11621.1
      UniProtKB/Swiss-Prot
      B2R779, B4DLT4, B4DTG1, E7ESB8, F6UYM1, P23443, Q7Z721
      UniProtKB/TrEMBL
      B4DDM0
      Related
      ENSP00000225577.4, ENST00000225577.9
      Conserved Domains (1) summary
      cd05584
      Location:94416
      STKc_p70S6K; Catalytic domain of the Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

    RNA

    1. NR_161455.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AC004686
    2. NR_161456.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AC004686
    3. NR_161457.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AC004686
    4. NR_161458.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AC004686
    5. NR_161459.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AC004686
    6. NR_161460.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AC004686
    7. NR_161461.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AC004686
    8. NR_161462.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AC004686

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      59893121..59950574
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011525102.4XP_011523404.1  ribosomal protein S6 kinase beta-1 isoform X1

      Conserved Domains (2) summary
      smart00220
      Location:91352
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd05584
      Location:94378
      STKc_p70S6K; Catalytic domain of the Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      60761869..60819318
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054316870.1XP_054172845.1  ribosomal protein S6 kinase beta-1 isoform X1