Format

Send to:

Choose Destination
    • Showing Current items.

    IPO9 importin 9 [ Homo sapiens (human) ]

    Gene ID: 55705, updated on 4-Nov-2018

    Summary

    Official Symbol
    IPO9provided by HGNC
    Official Full Name
    importin 9provided by HGNC
    Primary source
    HGNC:HGNC:19425
    See related
    Ensembl:ENSG00000198700 Vega:OTTHUMG00000035805
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    Imp9
    Expression
    Ubiquitous expression in brain (RPKM 7.6), thyroid (RPKM 6.7) and 25 other tissues See more
    Orthologs

    Genomic context

    See IPO9 in Genome Data Viewer
    Location:
    1q32.1
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 1 NC_000001.11 (201829160..201884294)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (201798288..201853422)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene neuron navigator 1 Neighboring gene IPO9 antisense RNA 1 Neighboring gene RNA, U6 small nuclear 501, pseudogene Neighboring gene microRNA 1231 Neighboring gene microRNA 6739 Neighboring gene shisa family member 4 Neighboring gene leiomodin 1 Neighboring gene translocase of inner mitochondrial membrane 17A

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Jun 15 11:32:44 2016

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    HIV-1 interactions

    Protein interactions

    Protein Gene Interaction Pubs
    Vpu vpu HIV-1 Vpu is identified to have a physical interaction with importin 9 (IPO9) in human HEK293 and/or Jurkat cell lines by using affinity tagging and purification mass spectrometry analyses PubMed

    Go to the HIV-1, Human Interaction Database

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • FLJ10402, DKFZp761M1547

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    Ran GTPase binding IEA
    Inferred from Electronic Annotation
    more info
     
    histone binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein transporter activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    protein import into nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein import into nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    membrane HDA PubMed 
    nuclear envelope IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    importin-9
    Names
    ran-binding protein 9
    ranBP9

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_018085.4NP_060555.2  importin-9

      See identical proteins and their annotated locations for NP_060555.2

      Status: VALIDATED

      Source sequence(s)
      AF410465, AL513217, AL645504, DA861528, DB232332
      Consensus CDS
      CCDS1415.1
      UniProtKB/Swiss-Prot
      Q96P70
      Related
      ENSP00000354742.4, OTTHUMP00000033949, ENST00000361565.8, OTTHUMT00000087088
      Conserved Domains (1) summary
      cl27876
      Location:34812
      Cse1; Cse1

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p12 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p12 Primary Assembly

      Range
      201829160..201884294
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center