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    COL5A3 collagen type V alpha 3 chain [ Canis lupus familiaris (dog) ]

    Gene ID: 484961, updated on 26-Sep-2018

    Summary

    Official Symbol
    COL5A3provided by VGNC
    Official Full Name
    collagen type V alpha 3 chainprovided by VGNC
    Primary source
    VGNC:VGNC:39479
    See related
    Ensembl:ENSCAFG00000017958
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs

    Genomic context

    See COL5A3 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    67
    Annotation release Status Assembly Chr Location
    105 current CanFam3.1 (GCF_000002285.3) 20 NC_006602.3 (51037604..51075220)

    Chromosome 20 - NC_006602.3Genomic Context describing neighboring genes Neighboring gene complement C3 Neighboring gene retinol dehydrogenase 8 Neighboring gene uncharacterized LOC102153974 Neighboring gene olfactomedin 2 Neighboring gene peptidylprolyl cis/trans isomerase, NIMA-interacting 1

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_006602.3 Chromosome 20 Reference CanFam3.1 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CanFam3.1 Primary Assembly

    Genomic

    1. NC_006602.3 Reference CanFam3.1 Primary Assembly

      Range
      51037604..51075220
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014122206.2XP_013977681.1  collagen alpha-3(V) chain isoform X1

      UniProtKB/TrEMBL
      F1P6C9
      Related
      ENSCAFP00000026524.3, ENSCAFT00000028514.3
      Conserved Domains (4) summary
      pfam01391
      Location:574633
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01410
      Location:15191747
      COLFI; Fibrillar collagen C-terminal domain
      cl22861
      Location:32211
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      cl26386
      Location:10001178
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    2. XM_022407071.1XP_022262779.1  collagen alpha-3(V) chain isoform X2

      Conserved Domains (4) summary
      pfam01391
      Location:572631
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01410
      Location:15171745
      COLFI; Fibrillar collagen C-terminal domain
      cl22861
      Location:32211
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      cl26386
      Location:9981176
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    3. XM_014122207.2XP_013977682.1  collagen alpha-3(V) chain isoform X3

      Conserved Domains (3) summary
      pfam01391
      Location:296355
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01410
      Location:12411469
      COLFI; Fibrillar collagen C-terminal domain
      cl26386
      Location:722900
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

    RNA

    1. XR_002616930.1 RNA Sequence

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