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    Dera deoxyribose-phosphate aldolase (putative) [ Mus musculus (house mouse) ]

    Gene ID: 232449, updated on 23-Jun-2021

    Summary

    Official Symbol
    Deraprovided by MGI
    Official Full Name
    deoxyribose-phosphate aldolase (putative)provided by MGI
    Primary source
    MGI:MGI:1913762
    See related
    Ensembl:ENSMUSG00000030225
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    DEOC; 2010002D22Rik; 2500002K03Rik
    Expression
    Broad expression in placenta adult (RPKM 22.5), large intestine adult (RPKM 18.1) and 24 other tissues See more
    Orthologs
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    Genomic context

    See Dera in Genome Data Viewer
    Location:
    6; 6 G1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (137731093..137814894)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (137754577..137837872)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (137703098..137786393)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 38915 Neighboring gene serine/threonine kinase receptor associated protein Neighboring gene predicted gene, 38552 Neighboring gene solute carrier family 15, member 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables deoxyribose-phosphate aldolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables deoxyribose-phosphate aldolase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in carbohydrate catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in deoxyribonucleoside catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in deoxyribonucleotide catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    deoxyribose-phosphate aldolase
    Names
    2-deoxy-D-ribose 5-phosphate aldolase
    2-deoxyribose-5-phosphate aldolase homolog
    deoxyriboaldolase
    phosphodeoxyriboaldolase
    putative deoxyribose-phosphate aldolase
    NP_766321.1
    XP_036021982.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172733.1NP_766321.1  deoxyribose-phosphate aldolase

      See identical proteins and their annotated locations for NP_766321.1

      Status: PROVISIONAL

      Source sequence(s)
      AK083298
      Consensus CDS
      CCDS20666.1
      UniProtKB/Swiss-Prot
      Q91YP3
      Related
      ENSMUSP00000084959.7, ENSMUST00000087675.9
      Conserved Domains (1) summary
      cd00959
      Location:50277
      DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      137731093..137814894
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036166089.1XP_036021982.1  deoxyribose-phosphate aldolase isoform X1

      Conserved Domains (1) summary
      cl21457
      Location:50234
      TIM; TIM-like beta/alpha barrel domains
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