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    ubq-1 Ubiquitin-related [ Caenorhabditis elegans ]

    Gene ID: 175840, updated on 22-Feb-2019

    Summary

    Gene symbol
    ubq-1
    Gene description
    Ubiquitin-related
    Primary source
    WormBase:WBGene00006727
    Locus tag
    CELE_F25B5.4
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

    Genomic context

    See ubq-1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    5
    Sequence:
    Chromosome: III; NC_003281.10 (5940991..5943708)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Matrix metalloproteinase-A Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene CDK5RAP1-like protein Neighboring gene Putative folylpolyglutamate synthase

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    protein tag IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ubiquitin protein ligase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    modification-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein ubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Ubiquitin-related
    NP_741157.1
    • Confirmed by transcript evidence
    NP_741158.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      5940991..5943708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_171139.4NP_741157.1  Ubiquitin-related [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741157.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0CG71
      Conserved Domains (2) summary
      cd01803
      Location:77152
      Ubiquitin; Ubiquitin
      smart00213
      Location:172
      UBQ; Ubiquitin homologues
    2. NM_171868.6NP_741158.2  Ubiquitin-related [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741158.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      G8JY83
      Conserved Domains (3) summary
      cd01803
      Location:77152
      Ubiquitin; Ubiquitin
      smart00213
      Location:172
      UBQ; Ubiquitin homologues
      cl00155
      Location:457503
      UBQ; Ubiquitin-like proteins
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