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SNRPG small nuclear ribonucleoprotein polypeptide G [ Homo sapiens (human) ]

Gene ID: 6637, updated on 15-Apr-2019

Summary

Official Symbol
SNRPGprovided by HGNC
Official Full Name
small nuclear ribonucleoprotein polypeptide Gprovided by HGNC
Primary source
HGNC:HGNC:11163
See related
Ensembl:ENSG00000143977 MIM:603542
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SMG; Sm-G
Summary
The protein encoded by this gene is a component of the U1, U2, U4, and U5 small nuclear ribonucleoprotein complexes, precursors of the spliceosome. The encoded protein may also be a part of the U7 small nuclear ribonucleoprotein complex, which participates in the processing of the 3' end of histone transcripts. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2015]
Expression
Ubiquitous expression in colon (RPKM 14.7), appendix (RPKM 13.1) and 25 other tissues See more
Orthologs

Genomic context

See SNRPG in Genome Data Viewer
Location:
2p13.3
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 2 NC_000002.12 (70281362..70293771, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (70508510..70520869, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein L39 pseudogene 15 Neighboring gene prenylcysteine oxidase 1 Neighboring gene family with sequence similarity 136 member A Neighboring gene bromodomain containing 7 pseudogene 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
NHGRI GWA Catalog

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Rev rev HIV-1 Rev interacting protein, small nuclear ribonucleoprotein polypeptide G (SNRPG), is identified by the in-vitro binding experiments involving cytosolic or nuclear extracts from HeLa cells. The interaction of Rev with SNRPG is increased by RRE PubMed

Go to the HIV-1, Human Interaction Database

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC117317

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding HDA PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
RNA splicing TAS
Traceable Author Statement
more info
PubMed 
histone mRNA metabolic process TAS
Traceable Author Statement
more info
 
import into nucleus TAS
Traceable Author Statement
more info
 
mRNA splicing, via spliceosome IC
Inferred by Curator
more info
PubMed 
mRNA splicing, via spliceosome IDA
Inferred from Direct Assay
more info
PubMed 
mRNA splicing, via spliceosome TAS
Traceable Author Statement
more info
 
spliceosomal complex assembly NAS
Non-traceable Author Statement
more info
PubMed 
spliceosomal snRNP assembly IDA
Inferred from Direct Assay
more info
PubMed 
spliceosomal snRNP assembly TAS
Traceable Author Statement
more info
 
termination of RNA polymerase II transcription TAS
Traceable Author Statement
more info
 
Component Evidence Code Pubs
P granule IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
SMN-Sm protein complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
SMN-Sm protein complex IDA
Inferred from Direct Assay
more info
PubMed 
U1 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
U1 snRNP IDA
Inferred from Direct Assay
more info
PubMed 
U12-type spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
U12-type spliceosomal complex IDA
Inferred from Direct Assay
more info
PubMed 
U2 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
U2-type catalytic step 2 spliceosome IDA
Inferred from Direct Assay
more info
PubMed 
U2-type precatalytic spliceosome IDA
Inferred from Direct Assay
more info
PubMed 
U2-type prespliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
U4 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
U4 snRNP IDA
Inferred from Direct Assay
more info
PubMed 
U4/U6 x U5 tri-snRNP complex IDA
Inferred from Direct Assay
more info
PubMed 
U5 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
U7 snRNP IDA
Inferred from Direct Assay
more info
PubMed 
catalytic step 2 spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
catalytic step 2 spliceosome IDA
Inferred from Direct Assay
more info
PubMed 
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
cytosol TAS
Traceable Author Statement
more info
 
methylosome IDA
Inferred from Direct Assay
more info
PubMed 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
nucleoplasm TAS
Traceable Author Statement
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
small nuclear ribonucleoprotein complex NAS
Non-traceable Author Statement
more info
PubMed 
spliceosomal complex TAS
Traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
small nuclear ribonucleoprotein G
Names
sm protein G
snRNP-G
NP_001304094.1
NP_001304095.1
NP_001304096.1
NP_001304097.1
NP_001304098.1
NP_001304100.1
NP_003087.1
XP_016860263.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001317165.1NP_001304094.1  small nuclear ribonucleoprotein G isoform b

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) contains an alternate internal exon compared to variant 1, that causes a frameshift. The resulting isoform (b) has a longer and distinct C-terminus compared to isoform a.
    Source sequence(s)
    AC079338, AI742299, AV682126, BP424287, DW428820
    Consensus CDS
    CCDS82463.1
    UniProtKB/TrEMBL
    C9JVQ0
    Related
    ENSP00000393388.1, ENST00000454893.1
    Conserved Domains (1) summary
    cd01719
    Location:560
    Sm_G; Sm protein G
  2. NM_001317166.1NP_001304095.1  small nuclear ribonucleoprotein G isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (c) has the same N- and C-termini but is 1 aa shorter compared to isoform a.
    Source sequence(s)
    AC079338, AI742299, AV682126, BU540400
    Conserved Domains (1) summary
    cd01719
    Location:573
    Sm_G; Sm protein G
  3. NM_001317167.1NP_001304096.1  small nuclear ribonucleoprotein G isoform d

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) uses an alternate exon in place of the first exon compared to variant 1. The resulting isoform (d) has a shorter and distinct N-terminus compared to isoform a.
    Source sequence(s)
    AI290354, AI742299
    Consensus CDS
    CCDS82462.1
    UniProtKB/TrEMBL
    F5H013
    Related
    ENSP00000416334.2, ENST00000413456.6
    Conserved Domains (1) summary
    cd01719
    Location:466
    Sm_G; Sm protein G
  4. NM_001317168.1NP_001304097.1  small nuclear ribonucleoprotein G isoform e

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) uses an alternate exon in place of the first exon compared to variant 1. The resulting isoform (e) is shorter at the N-terminus compared to isoform a. Variants 5 and 6 both encode the same isoform (e).
    Source sequence(s)
    AI742299, BC035103, HY168189
    Consensus CDS
    CCDS82461.1
    UniProtKB/TrEMBL
    Q49AN9
    Related
    ENSP00000441332.1, ENST00000482975.6
    Conserved Domains (1) summary
    cd01719
    Location:162
    Sm_G; Sm protein G
  5. NM_001317169.1NP_001304098.1  small nuclear ribonucleoprotein G isoform e

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) contains two alternate exons in place of the first exon compared to variant 1. The resulting isoform (e) is shorter at the N-terminus compared to isoform a. Variants 5 and 6 both encode the same isoform (e).
    Source sequence(s)
    AC079338, AI742299, HY168189
    Consensus CDS
    CCDS82461.1
    UniProtKB/TrEMBL
    Q49AN9
    Related
    ENSP00000402194.1, ENST00000438261.5
    Conserved Domains (1) summary
    cd01719
    Location:162
    Sm_G; Sm protein G
  6. NM_001317171.1NP_001304100.1  small nuclear ribonucleoprotein G isoform f

    Status: REVIEWED

    Description
    Transcript Variant: This variant (7) lacks an alternate exon in the 5' end compared to variant 1. The resulting isoform (f) is shorter at the N-terminus compared to isoform a.
    Source sequence(s)
    AC079338, AI742299, AV682126, CD109295
    Conserved Domains (1) summary
    cd01719
    Location:256
    Sm_G; Sm protein G
  7. NM_003096.4NP_003087.1  small nuclear ribonucleoprotein G isoform a

    See identical proteins and their annotated locations for NP_003087.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the highly conserved isoform (a).
    Source sequence(s)
    AI742299, BC106055, DW428820
    Consensus CDS
    CCDS1903.1
    UniProtKB/Swiss-Prot
    P62308
    Related
    ENSP00000272348.2, ENST00000272348.7
    Conserved Domains (1) summary
    cd01719
    Location:574
    Sm_G; Sm protein G

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p12 Primary Assembly

    Range
    70281362..70293771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017004774.1XP_016860263.1  small nuclear ribonucleoprotein G isoform X1

    UniProtKB/TrEMBL
    C9JVQ0
    Conserved Domains (1) summary
    cd01719
    Location:560
    Sm_G; Sm protein G
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