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LOC400499 putative uncharacterized protein LOC400499 [ Homo sapiens (human) ]

Gene ID: 400499, updated on 1-Aug-2020

Summary

Gene symbol
LOC400499
Gene description
putative uncharacterized protein LOC400499
See related
Ensembl:ENSG00000188897
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See LOC400499 in Genome Data Viewer
Location:
16p13.13
Exon count:
72
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (11372015..11527247, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (11536047..11585611, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371082 Neighboring gene uncharacterized LOC105371083 Neighboring gene mitochondrial ribosomal protein L18 pseudogene Neighboring gene RecQ mediated genome instability 2 Neighboring gene uncharacterized LOC101927131 Neighboring gene Sharpr-MPRA regulatory region 8116 Neighboring gene lipopolysaccharide induced TNF factor Neighboring gene Sharpr-MPRA regulatory region 4417 Neighboring gene uncharacterized LOC107984880

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

General protein information

Preferred Names
putative uncharacterized protein LOC400499

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370704.1NP_001357633.1  putative uncharacterized protein LOC400499 precursor

    Status: VALIDATED

    Source sequence(s)
    AC099489, KF573656
    Related
    ENSP00000470478.3, ENST00000598234.6
    Conserved Domains (3) summary
    cl26969
    Location:50585
    Vitellogenin_N; Lipoprotein amino terminal region
    pfam08742
    Location:32623308
    C8; C8 domain
    pfam09172
    Location:618910
    DUF1943; Domain of unknown function (DUF1943)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20200522

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    11372015..11527247 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017023936.1XP_016879425.1  putative uncharacterized protein LOC400499 isoform X8

  2. XM_017023930.1XP_016879419.1  putative uncharacterized protein LOC400499 isoform X2

  3. XM_017023935.1XP_016879424.1  putative uncharacterized protein LOC400499 isoform X7

  4. XM_017023933.1XP_016879422.1  putative uncharacterized protein LOC400499 isoform X5

  5. XM_017023932.1XP_016879421.1  putative uncharacterized protein LOC400499 isoform X4

  6. XM_017023934.1XP_016879423.1  putative uncharacterized protein LOC400499 isoform X6

  7. XM_017023929.1XP_016879418.1  putative uncharacterized protein LOC400499 isoform X1

  8. XM_017023931.1XP_016879420.1  putative uncharacterized protein LOC400499 isoform X3

  9. XM_017023940.1XP_016879429.1  putative uncharacterized protein LOC400499 isoform X12

  10. XM_017023941.1XP_016879430.1  putative uncharacterized protein LOC400499 isoform X13

  11. XM_017023943.1XP_016879432.1  putative uncharacterized protein LOC400499 isoform X15

  12. XM_017023946.1XP_016879435.1  putative uncharacterized protein LOC400499 isoform X18

  13. XM_017023947.2XP_016879436.1  putative uncharacterized protein LOC400499 isoform X19

  14. XM_017023939.1XP_016879428.1  putative uncharacterized protein LOC400499 isoform X11

  15. XM_017023938.1XP_016879427.1  putative uncharacterized protein LOC400499 isoform X10

  16. XM_017023937.1XP_016879426.1  putative uncharacterized protein LOC400499 isoform X9

  17. XM_017023942.1XP_016879431.1  putative uncharacterized protein LOC400499 isoform X14

  18. XM_017023944.1XP_016879433.1  putative uncharacterized protein LOC400499 isoform X16

  19. XM_017023945.1XP_016879434.1  putative uncharacterized protein LOC400499 isoform X17

  20. XM_017023948.1XP_016879437.1  putative uncharacterized protein LOC400499 isoform X20

  21. XM_017023949.1XP_016879438.1  putative uncharacterized protein LOC400499 isoform X21

RNA

  1. XR_001752082.1 RNA Sequence

  2. XR_001752083.1 RNA Sequence

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