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    znf973 zinc finger protein 973 [ Danio rerio (zebrafish) ]

    Gene ID: 557295, updated on 6-May-2021

    Summary

    Official Symbol
    znf973provided by ZNC
    Official Full Name
    zinc finger protein 973provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080218-9
    See related
    Ensembl:ENSDARG00000100896
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:174651; si:dkey-3p4.2
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    Genomic context

    See znf973 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (36774531..37246999)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (36432268..36904724)
    103 previous assembly Zv9 (GCF_000002035.4) 22 NC_007133.5 (30611389..30618780)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like Neighboring gene uncharacterized LOC108183679 Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene oocyte zinc finger protein XlCOF15-like Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene vegetative cell wall protein gp1-like Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene gastrula zinc finger protein XlCGF7.1 Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene uncharacterized LOC103910542 Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene zinc finger BED domain-containing protein 5-like Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon CGA) Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA arginine (anticodon GCG) Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene transfer RNA leucine (anticodon CAG) Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene transfer RNA threonine (anticodon CGU) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene transfer RNA asparagine (anticodon GUU)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of transcription, DNA-templated IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    zinc finger protein 300-like; zinc finger protein 973

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111155.1NP_001104625.1  zinc finger protein 973

      See identical proteins and their annotated locations for NP_001104625.1

      Status: VALIDATED

      Source sequence(s)
      BC154353
      UniProtKB/TrEMBL
      A8KC44
      Conserved Domains (3) summary
      COG5048
      Location:120337
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:124144
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:304329
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      36774531..37246999
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017355026.2XP_017210515.1  zinc finger protein 300-like isoform X2

      UniProtKB/TrEMBL
      F1R0E5
      Related
      ENSDARP00000130527.1, ENSDART00000172013.2
    2. XM_021475035.1XP_021330710.1  zinc finger protein 300-like isoform X1

      Conserved Domains (2) summary
      COG5048
      Location:120337
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:236256
      ZF_C2H2; C2H2 Zn finger [structural motif]
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