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    zgc:171551 zgc:171551 [ Danio rerio (zebrafish) ]

    Gene ID: 798325, updated on 6-May-2021

    Summary

    Official Symbol
    zgc:171551provided by ZNC
    Official Full Name
    zgc:171551provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080220-8
    See related
    Ensembl:ENSDARG00000073708
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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    Genomic context

    See zgc:171551 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (73729421..73739119, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (72087887..72097585, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 4 NC_007115.5 (58809543..58819241, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene zgc:173624 Neighboring gene gastrula zinc finger protein XlCGF49.1-like Neighboring gene si:dkey-262g12.10 Neighboring gene si:dkey-262g12.3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC798325

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113638.1NP_001107110.1  uncharacterized protein LOC798325

      See identical proteins and their annotated locations for NP_001107110.1

      Status: VALIDATED

      Source sequence(s)
      BC154452
      UniProtKB/TrEMBL
      A8WFT7
      Related
      ENSDARP00000097711.2, ENSDART00000108669.3
      Conserved Domains (4) summary
      COG5048
      Location:66439
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:301321
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:355377
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:286310
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      73729421..73739119 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394560.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      146586..156241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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