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    inava innate immunity activator [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100700567, updated on 13-Oct-2018

    Summary

    Gene symbol
    inava
    Gene description
    innate immunity activator
    See related
    Ensembl:ENSONIG00000011861
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Also known as
    lg20h1orf106; clg20h1orf106
    Expression
    Biased expression in testis (RPKM 7.0), eye (RPKM 2.0) and 3 other tissues See more
    Orthologs

    Genomic context

    See inava in Genome Data Viewer
    Location:
    chromosome: LG20
    Exon count:
    10
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG20 NC_031984.2 (20732750..20741807, complement)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG20 NC_031984.1 (24253855..24262907)

    Linkage Group LG20 - NC_031984.2Genomic Context describing neighboring genes Neighboring gene ribosomal protein L10a Neighboring gene lymphoid-restricted membrane protein Neighboring gene protein FAM107B Neighboring gene small Cajal body-specific RNA 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Oreochromis niloticus Transcriptome or Gene expression
    • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
    • BioProject: PRJNA78915
    • Analysis date: Fri Dec 29 00:23:36 2017

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    innate immunity activator protein
    Names
    linkage group 20 C1orf106 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031984.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      20732750..20741807 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005478131.4XP_005478188.1  innate immunity activator protein isoform X2

      Conserved Domains (1) summary
      pfam11819
      Location:11140
      DUF3338; Domain of unknown function (DUF3338)
    2. XM_003448222.5XP_003448270.1  innate immunity activator protein isoform X1

      UniProtKB/TrEMBL
      I3K1D6
      Related
      ENSONIP00000014931
      Conserved Domains (1) summary
      pfam11819
      Location:5139
      DUF3338; Domain of unknown function (DUF3338)
    3. XM_025901971.1XP_025757756.1  innate immunity activator protein isoform X1

      Conserved Domains (1) summary
      pfam11819
      Location:5139
      DUF3338; Domain of unknown function (DUF3338)
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