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    CCDC102B coiled-coil domain containing 102B [ Homo sapiens (human) ]

    Gene ID: 79839, updated on 16-Mar-2017
    Official Symbol
    CCDC102Bprovided by HGNC
    Official Full Name
    coiled-coil domain containing 102Bprovided by HGNC
    Primary source
    HGNC:HGNC:26295
    See related
    Ensembl:ENSG00000150636 Vega:OTTHUMG00000132808
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    AN; ACY1L; HsT1731; C18orf14
    Orthologs
    Location:
    18q22.1-q22.2
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    108 current GRCh38.p7 (GCF_000001405.33) 18 NC_000018.10 (68715221..69214350)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (66382466..66756517)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene metallothionein-like 3, pseudogene Neighboring gene thioredoxin related transmembrane protein 3 Neighboring gene RNA, U6 small nuclear 39, pseudogene Neighboring gene succinate dehydrogenase complex subunit C pseudogene 1 Neighboring gene aminoacylase 1 pseudogene Neighboring gene uncharacterized LOC107985134 Neighboring gene uncharacterized LOC107985135 Neighboring gene uncharacterized LOC107985136

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Jun 15 11:32:44 2016
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Clone Names

    • FLJ23594, MGC161726, MGC161728, DKFZp434K1426, DKFZp686I08254
    Preferred Names
    coiled-coil domain-containing protein 102B

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001093729.1NP_001087198.1  coiled-coil domain-containing protein 102B

      See identical proteins and their annotated locations for NP_001087198.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC022035, AK225597, BC126450, BQ003970, DB020599, DC382329
      Consensus CDS
      CCDS11996.2
      UniProtKB/TrEMBL
      A1A4H1
      Conserved Domains (2) summary
      pfam14662
      Location:345511
      KASH_CCD; Coiled-coil region of CCDC155 or KASH
      cl23720
      Location:431513
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
    2. NM_024781.2NP_079057.2  coiled-coil domain-containing protein 102B

      See identical proteins and their annotated locations for NP_079057.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK027247, CK823962, CR749520, DC380577
      Consensus CDS
      CCDS11996.2
      UniProtKB/Swiss-Prot
      Q68D86
      Related
      ENSP00000353377, OTTHUMP00000163692, ENST00000360242, OTTHUMT00000256225
      Conserved Domains (2) summary
      pfam14662
      Location:345511
      KASH_CCD; Coiled-coil region of CCDC155 or KASH
      cl23720
      Location:431513
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p7 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p7 Primary Assembly

      Range
      68715221..69214350
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017025976.1XP_016881465.1  coiled-coil domain-containing protein 102B isoform X4

      Conserved Domains (1) summary
      pfam14662
      Location:345511
      KASH_CCD; Coiled-coil region of CCDC155 or KASH
    2. XM_017025973.1XP_016881462.1  coiled-coil domain-containing protein 102B isoform X1

      Conserved Domains (1) summary
      pfam14662
      Location:345511
      KASH_CCD; Coiled-coil region of CCDC155 or KASH
    3. XM_017025975.1XP_016881464.1  coiled-coil domain-containing protein 102B isoform X3

      UniProtKB/Swiss-Prot
      Q68D86
      Conserved Domains (2) summary
      pfam14662
      Location:345511
      KASH_CCD; Coiled-coil region of CCDC155 or KASH
      cl23720
      Location:431513
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
    4. XM_017025980.1XP_016881469.1  coiled-coil domain-containing protein 102B isoform X7

    5. XM_017025979.1XP_016881468.1  coiled-coil domain-containing protein 102B isoform X6

    6. XM_017025978.1XP_016881467.1  coiled-coil domain-containing protein 102B isoform X6

    7. XM_017025974.1XP_016881463.1  coiled-coil domain-containing protein 102B isoform X1

      Conserved Domains (1) summary
      pfam14662
      Location:345511
      KASH_CCD; Coiled-coil region of CCDC155 or KASH
    8. XM_011526174.2XP_011524476.1  coiled-coil domain-containing protein 102B isoform X2

      See identical proteins and their annotated locations for XP_011524476.1

      Conserved Domains (1) summary
      pfam14662
      Location:345511
      KASH_CCD; Coiled-coil region of CCDC155 or KASH
    9. XM_017025977.1XP_016881466.1  coiled-coil domain-containing protein 102B isoform X5

    10. XM_011526175.2XP_011524477.1  coiled-coil domain-containing protein 102B isoform X8

      Related
      ENSP00000463538, OTTHUMP00000259649, ENST00000584775, OTTHUMT00000442435
      Conserved Domains (1) summary
      COG1196
      Location:107353
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RNA

    1. XR_935251.2 RNA Sequence

      Related
      ENST00000577772

    Alternate CHM1_1.1

    Genomic

    1. NC_018929.2 Alternate CHM1_1.1

      Range
      66377341..66718162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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