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RRN3P1 RRN3 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 730092, updated on 21-Dec-2019

Summary

Official Symbol
RRN3P1provided by HGNC
Official Full Name
RRN3 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:30548
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 9.2), lymph node (RPKM 8.6) and 25 other tissues See more

Genomic context

See RRN3P1 in Genome Data Viewer
Location:
16p12.2
Exon count:
12
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (21796630..21819174, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (21807951..21830495, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene methyltransferase like 9 Neighboring gene RNA, U6 small nuclear 196, pseudogene Neighboring gene immunoglobulin superfamily member 6 Neighboring gene otoancorin Neighboring gene uncharacterized LOC105371126 Neighboring gene uncharacterized LOC112268174 Neighboring gene nuclear pore complex interacting protein family member B4 Neighboring gene SMG1 pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Pathways from PubChem

General gene information

Markers

Other Names

  • RNA polymerase I transcription factor homolog pseudogene 1
  • RRN3 RNA polymerase I transcription factor homolog pseudogene
  • RRN3 homolog, RNA polymerase I transcription factor pseudogene 1

Clone Names

  • FLJ77916, FLJ99542, MGC138320, MGC138322

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA polymerase I core binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase I general transcription initiation factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
transcription initiation from RNA polymerase I promoter IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003370.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL702574, BC006441, BX101439, CN397262

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    21796630..21819174 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_017852933.1 Reference GRCh38.p13 PATCHES

    Range
    1285606..1308150
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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