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    GTF2H2C_2 GTF2H2 family member C, copy 2 [ Homo sapiens (human) ]

    Gene ID: 730394, updated on 10-Oct-2019

    Summary

    Official Symbol
    GTF2H2C_2provided by HGNC
    Official Full Name
    GTF2H2 family member C, copy 2provided by HGNC
    Primary source
    HGNC:HGNC:35418
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GTF2H2D
    Annotation information
    Annotation category: only annotated on alternate loci in reference assembly

    Genomic context

    See GTF2H2C_2 in Genome Data Viewer
    Location:
    5q13.2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    109.20190905 current GRCh38.p13 (GCF_000001405.39) 5 (ALT_REF_LOCI_1) NW_003315917.2 (965642..997938, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 Unlocalized Scaffold (PATCHES) NW_003315917.2 (965642..997974, complement)

    NW_003315917.2Genomic Context describing neighboring genes Neighboring gene POM121 membrane glycoprotein (rat) pseudogene Neighboring gene NAIP pseudogene 3 Neighboring gene NAIP promoter region Neighboring gene OCLN pseudogene 1 Neighboring gene small nucleolar RNA, C/D box 13B-2 Neighboring gene NAIP pseudogene 4

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ96295, MGC75049, MGC75050, MGC102806, MGC198575, DKFZp686M0199

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    nucleotide-excision repair IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nuclear speck IDA
    Inferred from Direct Assay
    more info
     
    transcription factor TFIIH core complex IEA
    Inferred from Electronic Annotation
    more info
     
    transcription factor TFIIH holo complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    general transcription factor IIH subunit 2-like protein
    Names
    general transcription factor IIH polypeptide 2-like protein
    general transcription factor IIH, polypeptide 2D

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001042490.4NP_001035955.1  general transcription factor IIH subunit 2-like protein isoform 1

      See identical proteins and their annotated locations for NP_001035955.1

      Status: VALIDATED

      Source sequence(s)
      AC138827, BC064557, BC065021, BC105980
      UniProtKB/Swiss-Prot
      Q6P1K8
      Conserved Domains (2) summary
      cd01453
      Location:56235
      vWA_transcription_factor_IIH_type; Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins ...
      cl06838
      Location:11385
      C1_4; TFIIH C1-like domain
    2. NM_001354437.1NP_001341366.1  general transcription factor IIH subunit 2-like protein isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC138827, BC064557, BC105980
      Conserved Domains (2) summary
      cd01453
      Location:56235
      vWA_transcription_factor_IIH_type; Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins ...
      cl06838
      Location:11385
      C1_4; TFIIH C1-like domain
    3. NM_001354438.1NP_001341367.1  general transcription factor IIH subunit 2-like protein isoform 1

      Status: VALIDATED

      Source sequence(s)
      BC064557, BC105980
      Conserved Domains (2) summary
      cd01453
      Location:56235
      vWA_transcription_factor_IIH_type; Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins ...
      cl06838
      Location:11385
      C1_4; TFIIH C1-like domain
    4. NM_001354439.1NP_001341368.1  general transcription factor IIH subunit 2-like protein isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC138827
      Conserved Domains (2) summary
      cd01453
      Location:1178
      vWA_transcription_factor_IIH_type; Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins ...
      cl06838
      Location:231331
      C1_4; TFIIH C1-like domain

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 ALT_REF_LOCI_1

    Genomic

    1. NW_003315917.2 Reference GRCh38.p13 ALT_REF_LOCI_1

      Range
      965642..997938 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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