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    hspd1 heat shock 60 protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 282676, updated on 12-Aug-2018

    Summary

    Official Symbol
    hspd1provided by ZNC
    Official Full Name
    heat shock 60 protein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-021206-1
    See related
    Ensembl:ENSDARG00000056160 Vega:OTTDARG00000020808
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    cb863; cpn60; fa04a05; fb22d10; fi27b05; sb:cb144; id:ibd2197; wu:fa04a05; wu:fb22d10; wu:fi04a12; wu:fi27b05
    Orthologs

    Genomic context

    See hspd1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (32286605..32300716, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (32475859..32489970, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101882911 Neighboring gene uncharacterized LOC101884483 Neighboring gene heat shock 10 protein 1 Neighboring gene MOB family member 4, phocein

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • RNA degradation, organism-specific biosystem (from KEGG)
      RNA degradation, organism-specific biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...
    • RNA degradation, conserved biosystem (from KEGG)
      RNA degradation, conserved biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    unfolded protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    'de novo' protein folding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    apoptotic mitochondrial changes IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    fin regeneration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    mitochondrion organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein folding IEA
    Inferred from Electronic Annotation
    more info
     
    protein import into mitochondrial intermembrane space IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein refolding IEA
    Inferred from Electronic Annotation
    more info
     
    tissue regeneration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitochondrial matrix IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    60 kDa heat shock protein, mitochondrial
    Names
    heat shock 60kD protein 1 (chaperonin)
    hsp60
    nbl
    no blastema
    NP_851847.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_181330.3NP_851847.1  60 kDa heat shock protein, mitochondrial

      See identical proteins and their annotated locations for NP_851847.1

      Status: PROVISIONAL

      Source sequence(s)
      BC068415
      UniProtKB/TrEMBL
      Q803B0
      Related
      ENSDARP00000073057.4, OTTDARP00000021497, ENSDART00000078596.6, OTTDART00000026176
      Conserved Domains (2) summary
      PTZ00114
      Location:24558
      PTZ00114; Heat shock protein 60; Provisional
      cd03344
      Location:28548
      GroEL; GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found ...

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      32286605..32300716 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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