Format

Send to:

Choose Destination

rtcR DNA-binding transcriptional activator RtcR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947928, updated on 10-Oct-2019

Summary

Gene symbol
rtcR
Gene description
DNA-binding transcriptional activator RtcR
Primary source
EcoGene:EG12356
Locus tag
b3422
See related
ASAP:ABE-0011174; ECOCYC:EG12356
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3408; yhgB
Summary
RtcR , "RNA terminal phosphate cyclase regulator," regulates the expression of genes involved in the ATP-dependent conversion of a 3'-phosphate at the end of RNA to 2',3'-cyclic phosphodiester . [More information is available at EcoCyc: EG12356].

Genomic context

Sequence:
NC_000913.3 (3558268..3559866)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene RNA 3'-terminal phosphate cyclase Neighboring gene RNA-splicing ligase Neighboring gene pseudo Neighboring gene rhomboid protease Neighboring gene thiosulfate sulfurtransferase GlpE

Pathways from PubChem

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
transcription factor binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
phosphorelay signal transduction system IEA
Inferred from Electronic Annotation
more info
 
positive regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
DNA-binding transcriptional activator RtcR

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3558268..3559866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417880.1 DNA-binding transcriptional activator RtcR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417880.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P38035
    Conserved Domains (1) summary
    COG4650
    Location:1531
    RtcR; Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms]
Support Center