Format

Send to:

Choose Destination

Speer4b spermatogenesis associated glutamate (E)-rich protein 4B [ Mus musculus (house mouse) ]

Gene ID: 73526, updated on 5-Aug-2018

Summary

Official Symbol
Speer4bprovided by MGI
Official Full Name
spermatogenesis associated glutamate (E)-rich protein 4Bprovided by MGI
Primary source
MGI:MGI:1920776
See related
Ensembl:ENSMUSG00000048703 Vega:OTTMUSG00000026698
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SPEER-4B; 1700081O22Rik
Expression
Biased expression in testis adult (RPKM 3.7), ovary adult (RPKM 0.9) and 2 other tissues See more

Genomic context

See Speer4b in Genome Data Viewer
Location:
5; 5 B1
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (27495809..27501392, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (27822349..27827932, complement)

Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene dipeptidylpeptidase 6 Neighboring gene predicted gene, 46944 Neighboring gene predicted gene, 34600 Neighboring gene predicted gene 16058 Neighboring gene PAX interacting (with transcription-activation domain) protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
spermatogenesis associated glutamate (E)-rich protein 4b
Names
sperm-associated glutamate (E)-rich protein 4b
spermatogenic-associated glutamate (E)-rich protein 4b

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028561.2NP_082837.1  spermatogenesis associated glutamate (E)-rich protein 4b

    See identical proteins and their annotated locations for NP_082837.1

    Status: VALIDATED

    Source sequence(s)
    AK006975, BC119075
    Consensus CDS
    CCDS19140.1
    UniProtKB/TrEMBL
    Q9D9F7
    Related
    ENSMUSP00000062903.3, OTTMUSP00000033029, ENSMUST00000053257.9, OTTMUST00000066058
    Conserved Domains (2) summary
    pfam04822
    Location:52133
    Takusan; Takusan
    cl14876
    Location:168231
    Zinc_peptidase_like; Zinc peptidases M18, M20, M28, and M42

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

    Range
    27495809..27501392 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center