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SSUBM407_1919 surface-anchored amylopullulanase [ Streptococcus suis BM407 ]

Gene ID: 8154207, updated on 6-Aug-2016

Summary

Gene symbol
SSUBM407_1919
Gene description
surface-anchored amylopullulanase
Locus tag
SSUBM407_1919
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptococcus suis BM407 (strain: BM407)
Lineage
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus

Genomic context

Sequence:
NC_012926.1 (2012658..2018942, complement)

NC_012926.1Genomic Context describing neighboring genes Neighboring gene PTS system lactose/cellobiose-specific family transporter subunit IIB Neighboring gene PTS system ascorbate-specific transporter subunit IIC Neighboring gene LacI family transcriptional regulator Neighboring gene glutamine transporter, ATP-binding protein 5

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Miscellaneous features

  • Loc: c2013089-2012856 HMMPfam hit to PF07501, G5, score 9.2e-13 inference = protein motif:HMMPfam:PF07501
  • Loc: c2014796-2014419 HMMPfam hit to PF00128, Alpha-amylase, score 7.2e-12 inference = protein motif:HMMPfam:PF00128
  • Loc: c2015222-2014953 HMMPfam hit to PF02922, Isoamylase_N, score 3e-15 inference = protein motif:HMMPfam:PF02922
  • Loc: c2015843-2015511 HMMPfam hit to PF03714, PUD, score 8.4e-41 inference = protein motif:HMMPfam:PF03714
  • Loc: c2016176-2015844 HMMPfam hit to PF03714, PUD, score 1.8e-34 inference = protein motif:HMMPfam:PF03714
  • Loc: c2017616-2016522 HMMPfam hit to PF00128, Alpha-amylase, score 6.8e-67 inference = protein motif:HMMPfam:PF00128
  • Loc: c2018312-2017986 HMMPfam hit to PF03714, PUD, score 2.2e-32 inference = protein motif:HMMPfam:PF03714
  • Loc: c2018645-2018313 HMMPfam hit to PF03714, PUD, score 4.4e-22 inference = protein motif:HMMPfam:PF03714
  • Loc: c2018885-2018817 1 probable transmembrane helix predicted for SSUBM407_1919 by TMHMM2.0 at aa 20-42 inference = protein motif:TMHMM:2.0
  • Loc: c2018924-2018844 HMMPfam hit to PF04650, YSIRK_signal, score 1.7e-08 inference = protein motif:HMMPfam:PF04650

General protein information

Names
surface-anchored amylopullulanase
YP_003029608.1
  • Orthologue of S. suis P17 (AM946016) SSU1849

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012926.1 Reference assembly

    Range
    2012658..2018942 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_003029608.1 surface-anchored amylopullulanase [Streptococcus suis BM407]

    See identical proteins and their annotated locations for YP_003029608.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0H3MYG2
    Conserved Domains (10) summary
    cd10315
    Location:10351139
    CBM41_pullulanase; Family 41 Carbohydrate-Binding Module from pullulanase-like enzymes
    cd02860
    Location:12401357
    E_set_Pullulanase; Early set domain associated with the catalytic domain of pullulanase (also called dextrinase and alpha-dextrin endo-1,6-alpha glucosidase)
    cd11341
    Location:13771819
    AmyAc_Pullulanase_LD-like; Alpha amylase catalytic domain found in Pullulanase (also called dextrinase; alpha-dextrin endo-1,6-alpha glucosidase), limit dextrinase, and related proteins
    TIGR02102
    Location:9211962
    pullulan_Gpos; pullulanase, extracellular, Gram-positive
    pfam00128
    Location:474775
    Alpha-amylase; Alpha amylase, catalytic domain
    pfam03714
    Location:9261025
    PUD; Bacterial pullanase-associated domain
    pfam04650
    Location:933
    YSIRK_signal; YSIRK type signal peptide
    pfam07501
    Location:19552016
    G5; G5 domain
    pfam11852
    Location:18061882
    DUF3372; Domain of unknown function (DUF3372)
    cl07893
    Location:438810
    AmyAc_family; Alpha amylase catalytic domain family
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