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    PRAMENP PRAME N-terminal like, pseudogene [ Homo sapiens (human) ]

    Gene ID: 649179, updated on 17-Jun-2024

    Summary

    Official Symbol
    PRAMENPprovided by HGNC
    Official Full Name
    PRAME N-terminal like, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:34302
    See related
    Ensembl:ENSG00000290847 AllianceGenome:HGNC:34302
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PRAMEL; PRAMEF24P
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See PRAMENP in Genome Data Viewer
    Location:
    22q11.22
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (21991099..22043934, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (22404651..22457485, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (22345496..22398332, complement)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:22292226-22293032 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:22293033-22293840 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:22293841-22294647 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:22298307-22298806 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:22306489-22307009 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13519 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:22318681-22319182 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:22319183-22319682 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63111 Neighboring gene PPM1F antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:22336585-22337571 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1F Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr22:22372768-22373375 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18713 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13520 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18715 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:22384595-22385375 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:22385376-22386155 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18719 Neighboring gene DNA topoisomerase III beta Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:22411410-22412173 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:22412174-22412936 Neighboring gene immunoglobulin lambda variable (IV)-66-1 (pseudogene) Neighboring gene immunoglobulin lambda variable (I)-70 (pseudogene) Neighboring gene immunoglobulin lambda variable 10-67 (pseudogene) Neighboring gene immunoglobulin lambda variable 4-69 Neighboring gene immunoglobulin lambda variable (I)-68 (pseudogene) Neighboring gene immunoglobulin lambda variable (V)-66 (pseudogene) Neighboring gene immunoglobulin lambda locus

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • PRAME family member 24, pseudogene
    • preferentially expressed antigen in melanoma-like

    Clone Names

    • FLJ16327

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135291.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA743646, AC245452, AK131325
      Related
      ENST00000337471.8

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      21991099..22043934 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      22404651..22457485 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)