Format

Send to:

Choose Destination
    • Showing Current items.

    HB53 homeobox 53 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836803, updated on 27-Sep-2019

    Summary

    Gene symbol
    HB53
    Gene description
    homeobox 53
    Primary source
    Araport:AT5G66700
    Locus tag
    AT5G66700
    Gene type
    protein coding
    RNA name
    homeobox 53
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA HOMEOBOX 53; ATHB53; HB-8; homeobox 53; HOMEOBOX-8; MSN2.9; MSN2_9
    Summary
    Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development.

    Genomic context

    See HB53 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (26634275..26635885)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_126068.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    positive regulation of transcription, DNA-templated IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    response to auxin IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    root development TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    homeobox 53
    NP_201471.1
    • homeobox 53 (HB53); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of transcription, DNA-dependent, root development; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 40 (TAIR:AT4G36740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26634275..26635885
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126068.3NP_201471.1  homeobox 53 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201471.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVR0
      UniProtKB/TrEMBL
      A0A178ULJ9
      Conserved Domains (1) summary
      pfam00046
      Location:76124
      Homeobox; Homeobox domain
    Support Center