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    Ttr transthyretin [ Mus musculus (house mouse) ]

    Gene ID: 22139, updated on 12-Aug-2019

    Summary

    Official Symbol
    Ttrprovided by MGI
    Official Full Name
    transthyretinprovided by MGI
    Primary source
    MGI:MGI:98865
    See related
    Ensembl:ENSMUSG00000061808
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D17860; AA408768; AI787086; prealbumin
    Summary
    This gene encodes a carrier protein responsible for the transport of thyroid hormones and retinol. The protein consists of a tetramer of identical subunits. Due to increased stability of the tetramer form of this encoded protein in mouse, compared to the human protein, this gene product has a reduced tendency to form amyloid fibrils. In humans, this protein binds beta-amyloid preventing its aggregation and providing a neuroprotective role in Alzheimer's disease. [provided by RefSeq, Mar 2010]
    Expression
    Biased expression in liver adult (RPKM 3655.3), liver E18 (RPKM 2930.2) and 7 other tissues See more
    Orthologs

    Genomic context

    See Ttr in Genome Data Viewer
    Location:
    18 A2; 18 11.47 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    108 current GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (20664209..20674326)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (20823751..20832827)

    Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene triosephosphate isomerase related sequence 10 Neighboring gene predicted gene, 46630 Neighboring gene desmoglein 2 Neighboring gene predicted gene 16090 Neighboring gene ribosomal protein L35 pseudogene Neighboring gene UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6 Neighboring gene predicted gene, 31437

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC107649

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    hormone activity IEA
    Inferred from Electronic Annotation
    more info
     
    hormone binding ISO
    Inferred from Sequence Orthology
    more info
     
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein heterodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    thyroid hormone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    purine nucleobase metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    retinol metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    thyroid hormone transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    protein-containing complex ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013697.5NP_038725.1  transthyretin precursor

      See identical proteins and their annotated locations for NP_038725.1

      Status: REVIEWED

      Source sequence(s)
      AC129078, CD742426
      Consensus CDS
      CCDS29085.1
      UniProtKB/Swiss-Prot
      P07309
      UniProtKB/TrEMBL
      Q5M9K1
      Related
      ENSMUSP00000074783.3, ENSMUST00000075312.4
      Conserved Domains (1) summary
      smart00095
      Location:27147
      TR_THY; Transthyretin

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p6 C57BL/6J

    Genomic

    1. NC_000084.6 Reference GRCm38.p6 C57BL/6J

      Range
      20664209..20674326
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030250412.1XP_030106272.1  transthyretin isoform X1

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