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    LOC9269602 keratin-associated protein 5-5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269602, updated on 13-Oct-2018

    Summary

    Gene symbol
    LOC9269602
    Gene description
    keratin-associated protein 5-5
    Locus tag
    OSNPB_030407400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GS3
    Expression
    Biased expression in flowers (RPKM 1.3), flower buds (RPKM 0.8) and 3 other tissues See more

    Genomic context

    See LOC9269602 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (16729452..16735460, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene protein LAZ1 homolog 2 Neighboring gene inter-alpha-trypsin inhibitor heavy chain H3 Neighboring gene uncharacterized LOC9266923 Neighboring gene serine/threonine-protein kinase RIPK Neighboring gene 60S ribosomal protein L27a-3

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    guanine nucleotide-binding protein subunit gamma 3; keratin-associated protein 5-5
    Names
    Os03g0407400
    seed length and weight protein long form for short seed
    seed length and weight protein short form for long seed

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      16729452..16735460 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026023637.1XP_025879422.1  guanine nucleotide-binding protein subunit gamma 3 isoform X3

      Conserved Domains (1) summary
      cl00069
      Location:2571
      GGL; G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
    2. XM_015774587.2XP_015630073.1  guanine nucleotide-binding protein subunit gamma 3 isoform X2

      Conserved Domains (1) summary
      cl00069
      Location:2571
      GGL; G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
    3. XM_015774586.2XP_015630072.1  keratin-associated protein 5-5 isoform X1

      UniProtKB/TrEMBL
      C6L686
      Conserved Domains (1) summary
      cl00069
      Location:2571
      GGL; G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors

    RNA

    1. XR_003241164.1 RNA Sequence

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