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    LOC107448187 autophagy-related protein 16-1 [ Parasteatoda tepidariorum (common house spider) ]

    Gene ID: 107448187, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC107448187
    Gene description
    autophagy-related protein 16-1
    See related
    EnsemblRapid:LOC107448187
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Parasteatoda tepidariorum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Entelegynae; Araneoidea; Theridiidae; Parasteatoda
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current Ptep_3.0 (GCF_000365465.3) Unplaced Scaffold NW_024970710.1 (220989..232775, complement)
    100 previous assembly Ptep_1.0 (GCF_000365465.1) Unplaced Scaffold NW_015482576.1 (411863..424803, complement)

    NW_024970710.1Genomic Context describing neighboring genes Neighboring gene carbonic anhydrase 7 Neighboring gene uncharacterized LOC107448182 Neighboring gene beclin 1-associated autophagy-related key regulator Neighboring gene uncharacterized LOC122271307

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evaluation of the impact of RNA preservation methods of spiders for de novo transcriptome assembly. Kono N, et al. Mol Ecol Resour, 2016 May. PMID 26561354
    2. Evolutionary origin of type IV classical cadherins in arthropods. Sasaki M, et al. BMC Evol Biol, 2017 Jun 17. PMID 28623893, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in autophagosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    autophagy-related protein 16-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Parasteatoda tepidariorum Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ptep_3.0

    Genomic

    1. NW_024970710.1 Reference Ptep_3.0

      Range
      220989..232775 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016063302.2 → XP_015918788.1  autophagy-related protein 16-1

      UniProtKB/TrEMBL
      A0A2L2YG83
      Related
      XP_015918788.1, XM_016063302.2
      Conserved Domains (5) summary
      COG2319
      Location:223 → 538
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:248 → 528
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam08614
      Location:10 → 176
      ATG16; Autophagy protein 16 (ATG16)
      sd00039
      Location:260 → 297
      7WD40; WD40 repeat [structural motif]
      cl03075
      Location:89 → 165
      GrpE; nucleotide exchange factor GrpE
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases