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    LOC105373177 uncharacterized LOC105373177 [ Homo sapiens (human) ]

    Gene ID: 105373177, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC105373177
    Gene description
    uncharacterized LOC105373177
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in kidney (RPKM 1.0), pancreas (RPKM 1.0) and 3 other tissues See more
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    Genomic context

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    See LOC105373177 in Genome Data Viewer
    Location:
    Xp11.4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (39774131..39808433)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (39174323..39208610)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene microRNA 3937 Neighboring gene Sharpr-MPRA regulatory region 11205 Neighboring gene Sharpr-MPRA regulatory region 4639 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chrX:39611900-39613099 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:39613945-39614894 Neighboring gene uncharacterized LOC105373178 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:39631621-39632253 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:39637201-39637702 Neighboring gene RNA, 7SL, cytoplasmic 732, pseudogene Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 1 Neighboring gene OOEP pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29528 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:39675935-39676850 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:39676851-39677768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:39686865-39687366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:39687367-39687866 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:39699064-39699252 Neighboring gene microRNA 1587 Neighboring gene Sharpr-MPRA regulatory region 12649 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29529 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29530 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:39717183-39717683 Neighboring gene ribosomal protein S11 pseudogene 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      39774131..39808433
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_949024.3 RNA Sequence

    2. XR_001755829.2 RNA Sequence

    3. XR_949025.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      39174323..39208610
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007090997.1 RNA Sequence

    2. XR_007090999.1 RNA Sequence

    3. XR_007090998.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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