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    LOC105372225 uncharacterized LOC105372225 [ Homo sapiens (human) ]

    Gene ID: 105372225, updated on 10-Dec-2024

    Summary

    Gene symbol
    LOC105372225
    Gene description
    uncharacterized LOC105372225
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LOC105372225 in Genome Data Viewer
    Location:
    18q23
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (79001397..79064040, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (79234544..79313181, complement)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:76736667-76737380 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:76741235-76742064 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:76743410-76744168 Neighboring gene NANOG hESC enhancer GRCh37_chr18:76744863-76745377 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:76753804-76754785 Neighboring gene long intergenic non-protein coding RNA 1896 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:76766909-76768108 Neighboring gene spalt like transcription factor 3 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:76816919-76817092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76819471-76819970 Neighboring gene ATPase phospholipid transporting 9B (putative) Neighboring gene uncharacterized LOC124904331 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:76905122-76905630 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:76905631-76906137 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13536 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:76941895-76942463 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9568 Neighboring gene MPRA-validated peak3193 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:77005320-77006519 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9569 Neighboring gene VISTA enhancer hs775 Neighboring gene uncharacterized LOC105372226 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13537

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      79001397..79064040 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001753514.2 RNA Sequence

    2. XR_001753513.2 RNA Sequence

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NW_003315961.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      65084..134590 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001756493.2 RNA Sequence

    2. XR_001756492.2 RNA Sequence

    Reference GRCh38.p14 ALT_REF_LOCI_2

    Genomic

    1. NT_187666.1 Reference GRCh38.p14 ALT_REF_LOCI_2

      Range
      66512..132753 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001756639.2 RNA Sequence

    2. XR_001756638.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      79234544..79313181 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007088534.1 RNA Sequence

    2. XR_007088533.1 RNA Sequence