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    LOC103335542 phosphoenolpyruvate carboxykinase [ATP]-like [ Prunus mume (Japanese apricot) ]

    Gene ID: 103335542, updated on 28-Dec-2023

    Summary

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    Gene symbol
    LOC103335542
    Gene description
    phosphoenolpyruvate carboxykinase [ATP]-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prunus mume
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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    Genomic context

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    See LOC103335542 in Genome Data Viewer
    Location:
    chromosome: LG1
    Exon count:
    12
    Annotation release Status Assembly LG Location
    101 current P.mume_V1.0 (GCF_000346735.1) LG1 NC_024126.1 (18462519..18465910)

    Linkage Group LG1 - NC_024126.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase I termination factor-like Neighboring gene phosphoenolpyruvate carboxykinase [ATP]-like Neighboring gene uncharacterized LOC103335559 Neighboring gene protein spt2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_024126.1 Chromosome LG1 Reference P.mume_V1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphoenolpyruvate carboxykinase (ATP) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gluconeogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphoenolpyruvate carboxykinase [ATP]-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prunus mume Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.mume_V1.0 Primary Assembly

    Genomic

    1. NC_024126.1 Reference P.mume_V1.0 Primary Assembly

      Range
      18462519..18465910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008238560.2 → XP_008236782.1  phosphoenolpyruvate carboxykinase [ATP]-like

      Conserved Domains (1) summary
      PLN02597
      Location:15 → 568
      PLN02597; phosphoenolpyruvate carboxykinase [ATP]
    Nucleotide Protein
    Heading Accession and Version

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