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    LOC6620013 protein tramtrack [ Drosophila sechellia ]

    Gene ID: 6620013, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC6620013
    Gene description
    protein tramtrack
    Locus tag
    Dsec_GM22600
    See related
    EnsemblRapid:LOC6620013
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila sechellia
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GM22600; GM22600-PA
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    Genomic context

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    Location:
    chromosome: X
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current ASM438219v1 (GCF_004382195.1) X NC_045954.1 (15934158..15937543)

    Chromosome X - NC_045954.1Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid receptor subunit beta-like Neighboring gene ran-binding protein 16 Neighboring gene stromal interaction molecule homolog Neighboring gene nuclear nucleic acid-binding protein C1D Neighboring gene serine/threonine-protein kinase spk-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045954.1 Chromosome X Reference ASM438219v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein tramtrack, beta isoform
    Names
    Dsec\GM22600
    Dsec\GM22600-PA
    dsec_GLEANR_5413

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM438219v1

    Genomic

    1. NC_045954.1 Reference ASM438219v1

      Range
      15934158..15937543
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002044189.2 → XP_002044225.1  protein tramtrack, beta isoform

      See identical proteins and their annotated locations for XP_002044225.1

      UniProtKB/TrEMBL
      B4IKG5
      Related
      XP_002044225.1, XM_002044189.2
      Conserved Domains (3) summary
      smart00225
      Location:34 → 117
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00376
      Location:375 → 404
      MerR; MerR family regulatory protein
      pfam00651
      Location:25 → 117
      BTB; BTB/POZ domain
    Nucleotide Protein Strain
    Heading Accession and Version

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