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    col-10 Cuticle collagen 10 [ Caenorhabditis elegans ]

    Gene ID: 179298, updated on 20-Oct-2023

    Summary

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    Gene symbol
    col-10
    Gene description
    Cuticle collagen 10
    Primary source
    WormBase:WBGene00000599
    Locus tag
    CELE_B0222.8
    See related
    AllianceGenome:WB:WBGene00000599
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See col-10 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    2
    Sequence:
    Chromosome: V; NC_003283.11 (9164292..9165307, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene Putative cuticle collagen 145 Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans. Wightman B, et al. Cell, 1993 Dec 3. PMID 8252622
    2. A Neurexin-related protein, BAM-2, terminates axonal branches in C. elegans. Colavita A, et al. Science, 2003 Oct 10. PMID 14551437
    3. Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation. Bagga S, et al. Cell, 2005 Aug 26. PMID 16122423
    4. Stage-specific patterns of collagen gene expression during development of Caenorhabditis elegans. Cox GN, et al. Mol Cell Biol, 1985 Feb. PMID 2983191, Free PMC Article
    5. lin-35 and lin-53, two genes that antagonize a C. elegans Ras pathway, encode proteins similar to Rb and its binding protein RbAp48. Lu X, et al. Cell, 1998 Dec 23. PMID 9875852

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables structural constituent of cuticle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in larval development NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Cuticle collagen 10
    NP_001370309.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      9164292..9165307 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001383367.2 → NP_001370309.1  Cuticle collagen 10 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q17460
      Conserved Domains (3) summary
      smart01088
      Location:4 → 56
      Col_cuticle_N; Nematode cuticle collagen N-terminal domain
      PRK07764
      Location:148 → 279
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam01391
      Location:150 → 206
      Collagen; Collagen triple helix repeat (20 copies)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q17460.1

    Gene LinkOut

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