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    RUP2 Transducin/WD40 repeat-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832438, updated on 4-Jul-2019

    Summary

    Gene symbol
    RUP2
    Gene description
    Transducin/WD40 repeat-like superfamily protein
    Primary source
    Araport:AT5G23730
    Locus tag
    AT5G23730
    Gene type
    protein coding
    RNA name
    Transducin/WD40 repeat-like superfamily protein
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EARLY FLOWERING BY OVEREXPRESSION 2; EFO2; MRO11.23; MRO11_23; REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2
    Summary
    Encodes REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2 (RUP2). Functions as a repressor of UV-B signaling.

    Genomic context

    See RUP2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (8005097..8006630)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene coiled-coil protein Neighboring gene DNA binding / DNA-directed RNA polymerase Neighboring gene dual specificity protein phosphatase family protein Neighboring gene ncRNA Neighboring gene ribosomal protein S11-beta

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Circadian rhythm - plant, organism-specific biosystem (from KEGG)
      Circadian rhythm - plant, organism-specific biosystemThe circadian system is an endogenous rhythm with the period of about 24 hours to provide temporal organization of biological activity. In Arabidopsis the circadian oscillator at the core of this sys...
    • Circadian rhythm - plant, conserved biosystem (from KEGG)
      Circadian rhythm - plant, conserved biosystemThe circadian system is an endogenous rhythm with the period of about 24 hours to provide temporal organization of biological activity. In Arabidopsis the circadian oscillator at the core of this sys...
    • Ubiquitin mediated proteolysis, organism-specific biosystem (from KEGG)
      Ubiquitin mediated proteolysis, organism-specific biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
    • Ubiquitin mediated proteolysis, conserved biosystem (from KEGG)
      Ubiquitin mediated proteolysis, conserved biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_122278.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    flower development IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    response to UV-B IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    response to UV-B IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    Cul4-RING E3 ubiquitin ligase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Transducin/WD40 repeat-like superfamily protein
    NP_568435.2
    • Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G52250.1); Has 12290 Blast hits to 8463 proteins in 487 species: Archae - 16; Bacteria - 2654; Metazoa - 3890; Fungi - 2899; Plants - 1307; Viruses - 0; Other Eukaryotes - 1524 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8005097..8006630
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122278.4NP_568435.2  Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568435.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFA7
      Conserved Domains (2) summary
      sd00039
      Location:4682
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:41362
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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