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    Arfip1 ADP-ribosylation factor interacting protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 99889, updated on 19-Feb-2019

    Summary

    Official Symbol
    Arfip1provided by MGI
    Official Full Name
    ADP-ribosylation factor interacting protein 1provided by MGI
    Primary source
    MGI:MGI:1277120
    See related
    Ensembl:ENSMUSG00000074513 Ensembl:ENSMUSG00000102805
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Arfaptin; D3Ertd598e; 2310030I10Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 12.6), placenta adult (RPKM 11.4) and 28 other tissues See more
    Orthologs

    Genomic context

    See Arfip1 in Genome Data Viewer
    Location:
    3; 3 F1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (84496093..84582834, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (84299985..84390065, complement)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930565D16 gene Neighboring gene FH2 domain containing 1 Neighboring gene high mobility group box 3 pseudogene Neighboring gene tigger transposable element derived 4 Neighboring gene predicted gene, 46836

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    phosphatidylinositol-4-phosphate binding ISO
    Inferred from Sequence Orthology
    more info
     
    phospholipid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    intracellular protein transport ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of protein secretion ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    Golgi membrane ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    trans-Golgi network membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    trans-Golgi network membrane ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081093.2NP_001074562.1  arfaptin-1 isoform 1

      See identical proteins and their annotated locations for NP_001074562.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC102224
      Consensus CDS
      CCDS38466.1
      UniProtKB/TrEMBL
      G5E8V9
      Related
      ENSMUSP00000122964.1, ENSMUST00000143514.2
      Conserved Domains (1) summary
      cd07660
      Location:155355
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin
    2. NM_001293801.1NP_001280730.1  arfaptin-1 isoform 2

      See identical proteins and their annotated locations for NP_001280730.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AC102224
      Consensus CDS
      CCDS79931.1
      UniProtKB/TrEMBL
      A2RSX9
      Related
      ENSMUSP00000096588.3, ENSMUST00000098990.9
      Conserved Domains (1) summary
      cd07660
      Location:123323
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      84496093..84582834 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006502484.2XP_006502547.1  arfaptin-1 isoform X2

      UniProtKB/TrEMBL
      E9QAY5
      Related
      ENSMUSP00000116393.1, ENSMUST00000154148.7
      Conserved Domains (1) summary
      cd07660
      Location:34234
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin
    2. XM_006502482.3XP_006502545.1  arfaptin-1 isoform X1

      See identical proteins and their annotated locations for XP_006502545.1

      UniProtKB/TrEMBL
      G5E8V9
      Conserved Domains (1) summary
      cd07660
      Location:155355
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin
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