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    Taf13 TATA-box binding protein associated factor 13 [ Mus musculus (house mouse) ]

    Gene ID: 99730, updated on 2-Oct-2018

    Summary

    Official Symbol
    Taf13provided by MGI
    Official Full Name
    TATA-box binding protein associated factor 13provided by MGI
    Primary source
    MGI:MGI:1913500
    See related
    Ensembl:ENSMUSG00000048100 Vega:OTTMUSG00000007260
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TAFII18; AI847295; 1810004N01Rik; 2010309N11Rik
    Expression
    Broad expression in CNS E11.5 (RPKM 19.4), bladder adult (RPKM 12.3) and 21 other tissues See more
    Orthologs

    Genomic context

    See Taf13 in Genome Data Viewer
    Location:
    3; 3 F3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (108571699..108582068)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (108374617..108384986)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene transmembrane protein 167B Neighboring gene small Cajal body-specific RNA 2 Neighboring gene WD repeat domain 47 Neighboring gene 40S ribosomal protein S23 pseudogene Neighboring gene chloride channel CLIC-like 1 Neighboring gene G-protein signalling modulator 2 (AGS3-like, C. elegans)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein C-terminus binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    transcription coregulator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor TFIID complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription factor TFIID complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    transcription initiation factor TFIID subunit 13
    Names
    TAF(II)18
    TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor
    TAF13 RNA polymerase II, TATA box-binding protein-associated factor
    TAFII-18
    TBP-associated factor, RNA polymerase II, K, 18kD
    transcription initiation factor TFIID 18 kDa subunit

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025444.2NP_079720.1  transcription initiation factor TFIID subunit 13

      See identical proteins and their annotated locations for NP_079720.1

      Status: PROVISIONAL

      Source sequence(s)
      AK007339
      Consensus CDS
      CCDS17764.1
      UniProtKB/Swiss-Prot
      P61216
      Related
      ENSMUSP00000121346.1, OTTMUSP00000007717, ENSMUST00000143054.1, OTTMUST00000016759
      Conserved Domains (1) summary
      cd07978
      Location:29118
      TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      108571699..108582068
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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