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    Cept1 choline/ethanolaminephosphotransferase 1 [ Mus musculus (house mouse) ]

    Gene ID: 99712, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cept1provided by MGI
    Official Full Name
    choline/ethanolaminephosphotransferase 1provided by MGI
    Primary source
    MGI:MGI:2139793
    See related
    Ensembl:ENSMUSG00000040774
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mCEPT1; 9930118K05Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 6.4), liver E18 (RPKM 5.4) and 27 other tissues See more
    Orthologs

    Genomic context

    See Cept1 in Genome Data Viewer
    Location:
    3; 3 F2.3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (106502260..106547802, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (106305178..106350679, complement)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene chitinase-like 6 Neighboring gene RIKEN cDNA 2010016I18 gene Neighboring gene DENN/MADD domain containing 2D Neighboring gene DNA-damage regulated autophagy modulator 2 Neighboring gene ligand dependent nuclear receptor interacting factor 1 Neighboring gene CD53 antigen

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    diacylglycerol cholinephosphotransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ethanolaminephosphotransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    phosphotransferase activity, for other substituted phosphate groups IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    phosphotransferase activity, for other substituted phosphate groups IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatidylcholine biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    phosphatidylethanolamine biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    phospholipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    choline/ethanolaminephosphotransferase 1
    NP_001280623.1
    NP_598630.2
    XP_006502534.1
    XP_006502535.1
    XP_006502536.1
    XP_011238638.1
    XP_017175329.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001293694.1NP_001280623.1  choline/ethanolaminephosphotransferase 1 isoform 2

      See identical proteins and their annotated locations for NP_001280623.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon and contains an alternate exon but maintains the reading frame compared to variant 1. The encoded isoform (4) is the same length as isoform 1, but contains a distinct internal segment.
      Source sequence(s)
      AC117200, AC140380
      Consensus CDS
      CCDS79995.1
      UniProtKB/Swiss-Prot
      Q8BGS7
      Related
      ENSMUSP00000037277.7, ENSMUST00000039153.13
      Conserved Domains (1) summary
      cl00453
      Location:43407
      CDP-OH_P_transf; CDP-alcohol phosphatidyltransferase
    2. NM_001357818.1NP_001344747.1  choline/ethanolaminephosphotransferase 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC117200, AC140380, CO425529, CX223901
      Conserved Domains (1) summary
      cl00453
      Location:43407
      CDP-OH_P_transf; CDP-alcohol phosphatidyltransferase
    3. NM_001357819.1NP_001344748.1  choline/ethanolaminephosphotransferase 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC117200, AC140380
      Conserved Domains (1) summary
      cl00453
      Location:43407
      CDP-OH_P_transf; CDP-alcohol phosphatidyltransferase
    4. NM_133869.4NP_598630.2  choline/ethanolaminephosphotransferase 1 isoform 1

      See identical proteins and their annotated locations for NP_598630.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes isoform (1).
      Source sequence(s)
      AK037116, BY226430
      Consensus CDS
      CCDS17723.1
      UniProtKB/Swiss-Prot
      Q8BGS7
      Related
      ENSMUSP00000065743.4, ENSMUST00000068301.10
      Conserved Domains (1) summary
      cl00453
      Location:43407
      CDP-OH_P_transf; CDP-alcohol phosphatidyltransferase

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      106502260..106547802 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006502471.3XP_006502534.1  choline/ethanolaminephosphotransferase 1 isoform X1

      See identical proteins and their annotated locations for XP_006502534.1

      UniProtKB/Swiss-Prot
      Q8BGS7
      Conserved Domains (1) summary
      cl00453
      Location:43407
      CDP-OH_P_transf; CDP-alcohol phosphatidyltransferase
    2. XM_006502472.3XP_006502535.1  choline/ethanolaminephosphotransferase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q8BGS7
      Related
      ENSMUSP00000112509.1, ENSMUST00000121231.7
      Conserved Domains (1) summary
      cl00453
      Location:43407
      CDP-OH_P_transf; CDP-alcohol phosphatidyltransferase
    3. XM_017319840.1XP_017175329.1  choline/ethanolaminephosphotransferase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q8BGS7
      Conserved Domains (1) summary
      cl00453
      Location:43407
      CDP-OH_P_transf; CDP-alcohol phosphatidyltransferase
    4. XM_006502473.3XP_006502536.1  choline/ethanolaminephosphotransferase 1 isoform X2

      Conserved Domains (1) summary
      cl00453
      Location:43235
      CDP-OH_P_transf; CDP-alcohol phosphatidyltransferase
    5. XM_011240336.1XP_011238638.1  choline/ethanolaminephosphotransferase 1 isoform X3

      Conserved Domains (1) summary
      cl00453
      Location:43209
      CDP-OH_P_transf; CDP-alcohol phosphatidyltransferase

    RNA

    1. XR_375610.2 RNA Sequence

    2. XR_001783787.1 RNA Sequence

    3. XR_001783786.1 RNA Sequence

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