Format

Send to:

Choose Destination
    • Showing Current items.

    Stard7 START domain containing 7 [ Mus musculus (house mouse) ]

    Gene ID: 99138, updated on 2-Oct-2018

    Summary

    Official Symbol
    Stard7provided by MGI
    Official Full Name
    START domain containing 7provided by MGI
    Primary source
    MGI:MGI:2139090
    See related
    Ensembl:ENSMUSG00000027367 Vega:OTTMUSG00000016010
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI852671; AL022671; AW544915
    Expression
    Ubiquitous expression in CNS E18 (RPKM 28.6), heart adult (RPKM 28.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Stard7 in Genome Data Viewer
    Location:
    2 F1; 2 61.88 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (127270202..127298935)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (127095965..127124670)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene cytosolic iron-sulfur protein assembly 1 Neighboring gene transmembrane protein 127 Neighboring gene predicted gene, 46762 Neighboring gene dual specificity phosphatase 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Clone Names

    • MGC27663

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    lipid binding IEA
    Inferred from Electronic Annotation
    more info
     
    phospholipid transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    phospholipid transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    stAR-related lipid transfer protein 7, mitochondrial
    Names
    START domain-containing protein 7

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362684.1NP_001349613.1  stAR-related lipid transfer protein 7, mitochondrial isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AK044519, AK143699, AL845368
      Conserved Domains (1) summary
      cl14643
      Location:139186
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily
    2. NM_139308.2NP_647469.2  stAR-related lipid transfer protein 7, mitochondrial isoform 1 precursor

      See identical proteins and their annotated locations for NP_647469.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
      Source sequence(s)
      AL845368
      Consensus CDS
      CCDS16698.2
      UniProtKB/Swiss-Prot
      Q8R1R3
      Related
      ENSMUSP00000106004.2, OTTMUSP00000017103, ENSMUST00000110375.8, OTTMUST00000038141
      Conserved Domains (1) summary
      cd08911
      Location:139328
      START_STARD7-like; Lipid-binding START domain of mammalian STARD7 and related proteins

    RNA

    1. NR_156114.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate coding exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AK143699, AL845368, BC017524, BQ745424

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      127270202..127298935
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017319355.1XP_017174844.1  stAR-related lipid transfer protein 7, mitochondrial isoform X1

      Related
      ENSMUSP00000116374.1, OTTMUSP00000017104, ENSMUST00000125049.1, OTTMUST00000038142
    Support Center