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    Stard7 START domain containing 7 [ Mus musculus (house mouse) ]

    Gene ID: 99138, updated on 23-Jun-2021

    Summary

    Official Symbol
    Stard7provided by MGI
    Official Full Name
    START domain containing 7provided by MGI
    Primary source
    MGI:MGI:2139090
    See related
    Ensembl:ENSMUSG00000027367
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI852671; AL022671; AW544915
    Expression
    Ubiquitous expression in CNS E18 (RPKM 28.6), heart adult (RPKM 28.6) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Stard7 in Genome Data Viewer
    Location:
    2 F1; 2 61.88 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (127112122..127140855)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (127270202..127298935)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (127095965..127124670)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene cytosolic iron-sulfur protein assembly 1 Neighboring gene transmembrane protein 127 Neighboring gene predicted gene, 54150 Neighboring gene predicted gene, 46762

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC27663

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in extracellular region IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    stAR-related lipid transfer protein 7, mitochondrial
    Names
    START domain-containing protein 7

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362684.1NP_001349613.1  stAR-related lipid transfer protein 7, mitochondrial isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AK044519, AK143699, AL845368
      Conserved Domains (1) summary
      cl14643
      Location:139186
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily
    2. NM_139308.2NP_647469.2  stAR-related lipid transfer protein 7, mitochondrial isoform 1 precursor

      See identical proteins and their annotated locations for NP_647469.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
      Source sequence(s)
      AL845368
      Consensus CDS
      CCDS16698.2
      UniProtKB/Swiss-Prot
      Q8R1R3
      Related
      ENSMUSP00000106004.3, ENSMUST00000110375.9
      Conserved Domains (1) summary
      cd08911
      Location:139328
      START_STARD7-like; Lipid-binding START domain of mammalian STARD7 and related proteins

    RNA

    1. NR_156114.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate coding exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AK143699, AL845368, BC017524, BQ745424

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      127112122..127140855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_003953754.1 RNA Sequence

      Related
      ENSMUST00000125049.2
    2. XR_003953755.2 RNA Sequence

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