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    Khdc1b KH domain containing 1B [ Mus musculus (house mouse) ]

    Gene ID: 98582, updated on 23-Jun-2021

    Summary

    Official Symbol
    Khdc1bprovided by MGI
    Official Full Name
    KH domain containing 1Bprovided by MGI
    Primary source
    MGI:MGI:2138477
    See related
    Ensembl:ENSMUSG00000085079
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Khdc1; C85331; C86372; C88118; Khdc1c; AU014713; AU015226; AU024076; AY238603
    Expression
    Biased expression in ovary adult (RPKM 1.6) and genital fat pad adult (RPKM 0.1) See more
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    Genomic context

    See Khdc1b in Genome Data Viewer
    Location:
    1; 1 A4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (21453780..21456608)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (21383556..21386384)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (21373637..21376465)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33147 Neighboring gene KH domain containing 1 pseudogene Neighboring gene KH domain containing 1 pseudogene Neighboring gene potassium voltage-gated channel, subfamily Q, member 5 Neighboring gene eukaryotic translation initiation factor 3, subunit M pseudogene Neighboring gene predicted gene, 53539

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    KH homology domain-containing protein 1B
    Names
    KH homology domain containing 1
    KH homology domain containing 1B
    oocyte-specific Khdc1
    peptidase M20 domain containing 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113187.1NP_001106658.1  KH homology domain-containing protein 1B

      See identical proteins and their annotated locations for NP_001106658.1

      Status: PROVISIONAL

      Source sequence(s)
      AK139842, BG081161, CJ203626
      Consensus CDS
      CCDS48229.1
      UniProtKB/Swiss-Prot
      P0C7A0
      Related
      ENSMUSP00000120275.2, ENSMUST00000147615.2
      Conserved Domains (1) summary
      cd12795
      Location:1104
      FILIA_N_like; FILIA-N KH-like domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      21453780..21456608
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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