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    Nlrp4f NLR family, pyrin domain containing 4F [ Mus musculus (house mouse) ]

    Gene ID: 97895, updated on 22-May-2018

    Summary

    Official Symbol
    Nlrp4fprovided by MGI
    Official Full Name
    NLR family, pyrin domain containing 4Fprovided by MGI
    Primary source
    MGI:MGI:2145528
    See related
    Ensembl:ENSMUSG00000032999
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C86045; Nalp4f; Nalp-kappa; C330026N02Rik
    Expression
    Low expression observed in reference dataset See more

    Genomic context

    See Nlrp4f in Genome Data Viewer
    Location:
    13; 13 B3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (65177111..65205716, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (65278419..65307024, complement)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene olfactory receptor 465, pseudogene 1 Neighboring gene olfactory receptor 466 Neighboring gene zinc finger protein 369 Neighboring gene ribosomal protein L17 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    inflammatory response IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    NACHT, LRR and PYD domains-containing protein 4F
    Names
    NACHT, leucine rich repeat and PYD containing 4F
    NALP, kappa

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175290.4NP_780499.3  NACHT, LRR and PYD domains-containing protein 4F

      See identical proteins and their annotated locations for NP_780499.3

      Status: VALIDATED

      Source sequence(s)
      AK049352, AK135866, BC098479, CD541102, DV656119
      Consensus CDS
      CCDS49294.1
      UniProtKB/TrEMBL
      L7N1W9, Q3UX59, Q4G0D0, Q8BWZ1
      Related
      ENSMUSP00000041908.7, ENSMUST00000037372.7
      Conserved Domains (6) summary
      COG4886
      Location:630871
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00116
      Location:636926
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd08320
      Location:1088
      Pyrin_NALPs; Pyrin death domain found in NALP proteins
      sd00033
      Location:689713
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:718745
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:147315
      NACHT; NACHT domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      65177111..65205716 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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