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    B3galnt2 UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2 [ Mus musculus (house mouse) ]

    Gene ID: 97884, updated on 23-Jun-2021

    Summary

    Official Symbol
    B3galnt2provided by MGI
    Official Full Name
    UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2provided by MGI
    Primary source
    MGI:MGI:2145517
    See related
    Ensembl:ENSMUSG00000039242
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C80633; A930105D20Rik; D230016N13Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 13.6), CNS E11.5 (RPKM 13.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See B3galnt2 in Genome Data Viewer
    Location:
    13; 13 A1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (14129059..14173688)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (13954474..13999103)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (14046941..14091335)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein F pseudogene Neighboring gene pyruvate kinase, muscle pseudogene Neighboring gene zinc finger and BTB domain containing 7B pseudogene Neighboring gene tubulin-specific chaperone E Neighboring gene geranylgeranyl diphosphate synthase 1 Neighboring gene AT rich interactive domain 4B (RBP1-like) Neighboring gene predicted gene, 26129

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    General gene information

    Markers

    Homology

    Clone Names

    • MGC103263

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables UDP-glycosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables acetylgalactosaminyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    enables glycosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables hexosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within UDP-N-acetylgalactosamine metabolic process ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    involved_in protein O-linked glycosylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein glycosylation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2
    Names
    beta-1,3-GalNAc-T2
    beta-1,3-N-acetylgalactosaminyltransferase II
    NP_001349333.1
    NP_001349334.1
    NP_848755.1
    XP_006516881.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362404.1NP_001349333.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AK151677, CT009546
      Consensus CDS
      CCDS26246.1
      Related
      ENSMUSP00000152397.2, ENSMUST00000221974.2
      Conserved Domains (1) summary
      cl21608
      Location:330459
      Galactosyl_T; Galactosyltransferase
    2. NM_001362405.1NP_001349334.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AK035259, AK151677
      Consensus CDS
      CCDS26246.1
      Related
      ENSMUSP00000152755.2, ENSMUST00000221300.2
      Conserved Domains (1) summary
      cl21608
      Location:330459
      Galactosyl_T; Galactosyltransferase
    3. NM_178640.3NP_848755.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 precursor

      See identical proteins and their annotated locations for NP_848755.1

      Status: VALIDATED

      Source sequence(s)
      CT009546
      Consensus CDS
      CCDS26246.1
      UniProtKB/Swiss-Prot
      Q8BG28
      Related
      ENSMUSP00000097336.4, ENSMUST00000099747.5
      Conserved Domains (1) summary
      cl21608
      Location:330459
      Galactosyl_T; Galactosyltransferase

    RNA

    1. NR_155555.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK084275, AK134868, AK151677

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      14129059..14173688
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516818.3XP_006516881.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 isoform X1

      Conserved Domains (1) summary
      cl21608
      Location:298427
      Galactosyl_T; Galactosyltransferase

    RNA

    1. XR_873137.3 RNA Sequence

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