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    B3galnt2 UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2 [ Mus musculus (house mouse) ]

    Gene ID: 97884, updated on 31-Jan-2019

    Summary

    Official Symbol
    B3galnt2provided by MGI
    Official Full Name
    UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2provided by MGI
    Primary source
    MGI:MGI:2145517
    See related
    Ensembl:ENSMUSG00000039242
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C80633; A930105D20Rik; D230016N13Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 13.6), CNS E11.5 (RPKM 13.0) and 28 other tissues See more
    Orthologs

    Genomic context

    See B3galnt2 in Genome Data Viewer
    Location:
    13; 13 A1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (13954474..13999088)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (14046941..14091335)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein F pseudogene Neighboring gene pyruvate kinase, muscle pseudogene Neighboring gene zinc finger and BTB domain containing 7B pseudogene Neighboring gene tubulin-specific chaperone E Neighboring gene geranylgeranyl diphosphate synthase 1 Neighboring gene AT rich interactive domain 4B (RBP1-like)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Clone Names

    • MGC103263

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    acetylgalactosaminyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    acetylglucosaminyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity, transferring glycosyl groups IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    UDP-N-acetylgalactosamine metabolic process ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    protein O-linked glycosylation ISO
    Inferred from Sequence Orthology
    more info
     
    protein glycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein glycosylation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2
    Names
    beta-1,3-GalNAc-T2
    beta-1,3-N-acetylgalactosaminyltransferase II
    NP_848755.1
    XP_006516881.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362404.1NP_001349333.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AK151677, CT009546
      Conserved Domains (1) summary
      cl21608
      Location:330459
      Galactosyl_T; Galactosyltransferase
    2. NM_001362405.1NP_001349334.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AK035259, AK151677
      Conserved Domains (1) summary
      cl21608
      Location:330459
      Galactosyl_T; Galactosyltransferase
    3. NM_178640.3NP_848755.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 precursor

      See identical proteins and their annotated locations for NP_848755.1

      Status: VALIDATED

      Source sequence(s)
      CT009546
      Consensus CDS
      CCDS26246.1
      UniProtKB/Swiss-Prot
      Q8BG28
      Related
      ENSMUSP00000097336.3, ENSMUST00000099747.4
      Conserved Domains (1) summary
      cl21608
      Location:330459
      Galactosyl_T; Galactosyltransferase

    RNA

    1. NR_155555.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK084275, AK134868, AK151677

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      13954474..13999088
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516818.3XP_006516881.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 isoform X1

      Conserved Domains (1) summary
      cl21608
      Location:298427
      Galactosyl_T; Galactosyltransferase

    RNA

    1. XR_873137.1 RNA Sequence

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