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    Fam8a1 family with sequence similarity 8, member A1 [ Mus musculus (house mouse) ]

    Gene ID: 97863, updated on 31-Jan-2019

    Summary

    Official Symbol
    Fam8a1provided by MGI
    Official Full Name
    family with sequence similarity 8, member A1provided by MGI
    Primary source
    MGI:MGI:2145496
    See related
    Ensembl:ENSMUSG00000069237
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C78339
    Expression
    Ubiquitous expression in duodenum adult (RPKM 22.1), CNS E18 (RPKM 20.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Fam8a1 in Genome Data Viewer
    Location:
    13; 13 A5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (46669443..46678064)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (46764891..46771142)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 35110 Neighboring gene CAP, adenylate cyclase-associated protein, 2 (yeast) Neighboring gene nucleoporin 153 Neighboring gene predicted gene, 46412 Neighboring gene kinesin family member 13A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033192.2NP_001028364.1  protein FAM8A1

      See identical proteins and their annotated locations for NP_001028364.1

      Status: PROVISIONAL

      Source sequence(s)
      AK141282
      Consensus CDS
      CCDS26485.1
      UniProtKB/TrEMBL
      Q3URQ4
      Related
      ENSMUSP00000097144.3, ENSMUST00000099547.3
      Conserved Domains (1) summary
      pfam06271
      Location:230389
      RDD; RDD family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      46669443..46678064
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516985.2XP_006517048.1  protein FAM8A1 isoform X1

      Conserved Domains (1) summary
      PHA03169
      Location:487
      PHA03169; hypothetical protein; Provisional
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