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    Fam8a1 family with sequence similarity 8, member A1 [ Mus musculus (house mouse) ]

    Gene ID: 97863, updated on 23-Jun-2021

    Summary

    Official Symbol
    Fam8a1provided by MGI
    Official Full Name
    family with sequence similarity 8, member A1provided by MGI
    Primary source
    MGI:MGI:2145496
    See related
    Ensembl:ENSMUSG00000069237
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C78339
    Expression
    Ubiquitous expression in duodenum adult (RPKM 22.1), CNS E18 (RPKM 20.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Fam8a1 in Genome Data Viewer
    Location:
    13; 13 A5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (46822953..46831540)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (46669477..46678064)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (46764891..46771142)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35110 Neighboring gene CAP, adenylate cyclase-associated protein, 2 (yeast) Neighboring gene VISTA enhancer mm132 Neighboring gene nucleoporin 153 Neighboring gene predicted gene, 46412 Neighboring gene kinesin family member 13A Neighboring gene predicted gene, 24620

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    part_of Hrd1p ubiquitin ligase complex ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033192.3NP_001028364.1  protein FAM8A1 isoform 1

      See identical proteins and their annotated locations for NP_001028364.1

      Status: VALIDATED

      Source sequence(s)
      AC124598
      Consensus CDS
      CCDS26485.1
      UniProtKB/TrEMBL
      Q3URQ4
      Related
      ENSMUSP00000097144.4, ENSMUST00000099547.4
      Conserved Domains (1) summary
      pfam06271
      Location:230389
      RDD; RDD family
    2. NM_001377109.1NP_001364038.1  protein FAM8A1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC124598

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      46822953..46831540
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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