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    Lztfl1 leucine zipper transcription factor-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 93730, updated on 22-Aug-2021

    Summary

    Official Symbol
    Lztfl1provided by MGI
    Official Full Name
    leucine zipper transcription factor-like 1provided by MGI
    Primary source
    MGI:MGI:1934860
    See related
    Ensembl:ENSMUSG00000025245
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI414725; AW048545; 5530402H04Rik; 6130400H19Rik
    Expression
    Broad expression in frontal lobe adult (RPKM 3.1), cortex adult (RPKM 2.8) and 22 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Lztfl1 in Genome Data Viewer
    Location:
    9 F4; 9 74.36 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (123523469..123546690, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (123694404..123717625, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (123606711..123626675, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 6 (neurotransmitter transporter), member 20A Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene Neighboring gene predicted gene 17021 Neighboring gene chemokine (C-C motif) receptor 9 Neighboring gene FYVE and coiled-coil domain containing 1 Neighboring gene chemokine (C-X-C motif) receptor 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC106871

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein-containing complex binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein-containing complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    leucine zipper transcription factor-like protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_033322.3NP_201579.1  leucine zipper transcription factor-like protein 1

      See identical proteins and their annotated locations for NP_201579.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) reprsents the protein-coding variant.
      Source sequence(s)
      AK054003, AK147312, BE979461
      Consensus CDS
      CCDS40818.1
      UniProtKB/Swiss-Prot
      Q9JHQ5
      Related
      ENSMUSP00000026274.8, ENSMUST00000026274.14
      Conserved Domains (1) summary
      pfam15294
      Location:20294
      Leu_zip; Leucine zipper

    RNA

    1. NR_151689.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AK147312, BE979461
      Related
      ENSMUST00000165754.8

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      123523469..123546690 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006512403.5XP_006512466.1  leucine zipper transcription factor-like protein 1 isoform X1

      Related
      ENSMUSP00000132359.2, ENSMUST00000168921.2
      Conserved Domains (1) summary
      pfam15294
      Location:3277
      Leu_zip; Leucine zipper
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